Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241900g00006 ATGAAGAGGGCTAGAAAGTATTATGAAGGACATGCAGTGGGAATTGATCTTGGCACGACATACTCTTGTGTTGCAGTATGGCAGGAGCAACATTGTCGTGTTGAGATCATTCATAATGATCAGGGCAACAGAACAACACCTTCCTCCGTTGCTTTCACTCAGAATCAAAGGCTAATTGGAGATGCTGCTAAGAACCAGGCTGCCGCTAACCCAACTAACACTGTCTTTGATGCTAAGAGATTGATCGGTAGAAAATATAGTGATCCGATTGTCAAGAATGATATCCTGATGTGGCCGTTTAAGATGCGAGAGATTGCAGAGGCATTCTTAGAGTCACCTGTTCGTAATGCTGTTATTACTGTACCTGCTTATTTCAATGGCTCTCAGCGCAAAGCTACCATAGATGCTGGCATCATTGCAGGTCTCAACGTGATGAGAATAATCAATGAGCCAACCGCTGCGGCCATTGCATATGGCCTTGACAAGAGATCTAATTGTGCCAGTGAGCGTAATATCTTCGTCTTTGATCTTGGAGGTGGCACTTTTGATGTGTCTCTCCTTACTATCAAGGGTAAGGTCTTCCAAGTTAAGGCTACTGCTGGAAACACACACCTTGGTGGAGAGGATTTTGATAACAGACTAGTGAGTTACTTTGTTAAGGAATTCAATAGAAAGAATAAGCTTGACATTAGTAGCAATGCCAAAGCCTTAAGGAGATTGAGAACTGCTTGTGAGAAGGCAAAGAGGACTTTATCTCATGCCGTTACTGCCACCATTGAGTTAGATGCTTTCTTTACAGGAATTGACTTCTGTTCTTCAATCACTCGCGCTAGATTCGAAGAACTTAATTCAGACCTCTTTAGAGAGTGCTTGGAAACGGTAGATCGATGCCTAAACAATGCAAAAATGGACAAGGCTAGTGTACATGATGTGGTGCTTGTTGGTGGCTCTTCTAGGATTCCCAAAGTGCAGCAGTTGTTGCAAGAATTTTTCAGGGGAAAGGAGCTTTGTAAGAGCATCAATCCTGATGAAGCTGTTGCTTATGGCGCAGCTGTTACTGCTGCTTTGTTGAATGGAGGCGCTAAGAGTACTGCTCCAGACTTGGTGCTGCAGGATGTTACTCCTCTGTCGCTTGGTCAAGCGGTAAGAAGAGATGTCATGAGCGTTGTAATTCCAAGGAATACTACCATTCCTGTAAAGAAGAAAGCGAATTTTTACCCGATCAAAGACAACCAATCATATATGCTTCTAAAGATTTACGAGGGTGAAAGGGCAAGAGCCAGTGATAACAACTTGCTCGGTCAATTTAAAGTTTCAGGAATCCGTCCTGCCCCTAAAGGTCATCCTATATTTGCATGTTATGAGTTAGATGCTGATGGCATCCTTTGTGTAACTGCTGAGGATAAGTCCACTGGCAATAAAAACCACATTACCATAACAAATGATAAAGGAAGACTTTCGGGGGCAGAAATCGAAGGGCTCATTGAGGAAGCTGAGAGATACAAGGTTGCTGATGAGAAGTTTCTTGAGAAAGCTAAAGCAATGAATGCCTTGGATGATTATGTTTATGACATGGAGAAAGCCTTAATCGGTTCTAAGCTTTTTCCTGAGGATAAGAAGAAGCTAAATTCTGCAATTGATAAGGCTAGAACTCTGCTTGATGATGGTGACAAGGAGAAGAAAGAAATTCACGTGTTTGTGGAGTATCTTAATGAAGCTAAGCGCATTTTTGAGCCCATTAAAGCTAGGACTGGTTAG 1758 0.4249 MKRARKYYEGHAVGIDLGTTYSCVAVWQEQHCRVEIIHNDQGNRTTPSSVAFTQNQRLIGDAAKNQAAANPTNTVFDAKRLIGRKYSDPIVKNDILMWPFKMREIAEAFLESPVRNAVITVPAYFNGSQRKATIDAGIIAGLNVMRIINEPTAAAIAYGLDKRSNCASERNIFVFDLGGGTFDVSLLTIKGKVFQVKATAGNTHLGGEDFDNRLVSYFVKEFNRKNKLDISSNAKALRRLRTACEKAKRTLSHAVTATIELDAFFTGIDFCSSITRARFEELNSDLFRECLETVDRCLNNAKMDKASVHDVVLVGGSSRIPKVQQLLQEFFRGKELCKSINPDEAVAYGAAVTAALLNGGAKSTAPDLVLQDVTPLSLGQAVRRDVMSVVIPRNTTIPVKKKANFYPIKDNQSYMLLKIYEGERARASDNNLLGQFKVSGIRPAPKGHPIFACYELDADGILCVTAEDKSTGNKNHITITNDKGRLSGAEIEGLIEEAERYKVADEKFLEKAKAMNALDDYVYDMEKALIGSKLFPEDKKKLNSAIDKARTLLDDGDKEKKEIHVFVEYLNEAKRIFEPIKARTG 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241900g00006 585 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 514 583 IPR029048 -
Stsc241900g00006 585 SUPERFAMILY Actin-like ATPase domain 11 162 IPR043129 -
Stsc241900g00006 585 Gene3D - 163 337 - -
Stsc241900g00006 585 PANTHER HEAT SHOCK PROTEIN 70KDA 12 548 IPR013126 GO:0005524|GO:0140662
Stsc241900g00006 585 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 366 519 IPR029047 -
Stsc241900g00006 585 ProSitePatterns Heat shock hsp70 proteins family signature 1. 15 22 IPR018181 -
Stsc241900g00006 585 ProSitePatterns Heat shock hsp70 proteins family signature 2. 174 187 IPR018181 -
Stsc241900g00006 585 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 363 515 IPR029047 -
Stsc241900g00006 585 FunFam Heat shock 70 kDa protein 361 515 - -
Stsc241900g00006 585 Gene3D - 516 584 IPR029048 -
Stsc241900g00006 585 FunFam Heat shock 70 kDa 206 289 - -
Stsc241900g00006 585 Pfam Hsp70 protein 101 562 IPR013126 GO:0005524|GO:0140662
Stsc241900g00006 585 FunFam heat shock 70 kDa protein-like 6 173 - -
Stsc241900g00006 585 PRINTS 70kDa heat shock protein signature 447 463 - -
Stsc241900g00006 585 PRINTS 70kDa heat shock protein signature 367 386 - -
Stsc241900g00006 585 PRINTS 70kDa heat shock protein signature 11 24 - -
Stsc241900g00006 585 PRINTS 70kDa heat shock protein signature 41 53 - -
Stsc241900g00006 585 PRINTS 70kDa heat shock protein signature 340 360 - -
Stsc241900g00006 585 PRINTS 70kDa heat shock protein signature 117 137 - -
Stsc241900g00006 585 PRINTS 70kDa heat shock protein signature 308 324 - -
Stsc241900g00006 585 PRINTS 70kDa heat shock protein signature 63 71 - -
Stsc241900g00006 585 PRINTS 70kDa heat shock protein signature 180 190 - -
Stsc241900g00006 585 SUPERFAMILY Actin-like ATPase domain 169 357 IPR043129 -
Stsc241900g00006 585 Gene3D - 3 101 - -
Stsc241900g00006 585 ProSitePatterns Heat shock hsp70 proteins family signature 3. 311 325 IPR018181 -
Stsc241900g00006 585 Gene3D - 102 355 - -
Stsc241900g00006 585 FunFam Heat shock protein ssb1 76 113 - -
Stsc241900g00006 585 Gene3D Actin; Chain A, domain 4 206 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241900g00006 Stsc-Chr241900 21450 24065 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241900g00006 9 583 Calmodulin-binding Proteins AT3G12580 62.866 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241900g00006 K03283 - gmx:102667578 790.03