Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241900g00005 ATGGCGAGAAAGTATAAAGGACATGCAGTTGGAATTGACCTTGGCACGACATACTCTTGTGTTGCAGTATGGCAGGAGCAACATTGTCGTGTGGAGATCATTCATAATGACCAGGGCAACAGAACAACACCTTCCTACGTTGCTTTCACTGCGAATCAAAGGTTTATTGGAGATGCTGCTAAGAACCAGGCTGCCGCTAACCCAACTAACACTGTCTTTGATTTTAAGAGATTGATCGGTAGAAAATATAGTGATCCGATTGTCAAGAATGATATCCTGATGTGGCCATTTAAGGTCACTGCTGGTGCTGATGATAAACCAATGATTGTTGTTACATACAAGGATCAAGAGAAGCACTTTTCTGCAGAAGAAATCTCATCTATGGTTCTCACTAAGATGCGAGAGATTGCAGAGGCATACTTAGAGTCACCTGTTTGTCTCAATGTGATGATGAGAATAATCAATGAGCCAACAGCTGCGGCCATTGCATATGGCCTTGACAAAAGATCTGGTTGTGCCAAGGAGCGTAACGTGTTCATCTTTGATCTTGGTGGGGGTACATTTGATGTTTCTCTCCTTACTATTAAGGACAAGGTCTTCAAAGTTAAGGCTACTGCCGGAAACACTCACCTCGGTGGAGAGGATTTTGATAGCAGACTAGTGAGTTACTTTGTTAAGGAATTCGAGAGAAAGAACAAGGTTGACATTAGTGGAAATGCCAGAGCCTTGAGGAGACTGAGAACTGCTTGTGAGAAGGCTAAGAGGACTTTATCTTATGCCGTTACTGCTACCATTGAATTAGATGCTTTCTATAATGGAATTGACTTATATTCATCAATCACTCGTGCTAAATTTGAAGAACTTAATATGGAACTCTTTAGAGAGTGCGTGGAAACAGTAGATCAATGCCTTAGTGATGCGAAAATGGACAAGGCAAGTGTACATGATGTGGTGCTTGTTGGTGGCTCTTCTAGGATTCCCAAAGTACAGGAATTATTGCAAGAATATTTCAAGGGAAAGGAGCTTTGTAAGAGCATCAATCCTGACGAAGCTGTTGCATATGGAGCAGCTGTTAAGGCTGCTTTGTTGAATGGAGGCACTAAGAGTACTGCCCCAGACTTGGTGCTGCAAGATGTTACTCCTCTCTCTCTTGGTGTGGGGACAAAAAGAGATGTCATGACTGTTGTGATTCCAAGGAATACTACCATTCCTCTAAGGAAGTCAAAGACTTTTGAGACTGCCTATGACAACCAATCATCTGTTGATATGAAGATTTACGAAGGTGAAAGGGCAAGAGCCAGCGATAATAACTTGCTCGGTAAATTTACACTTTCAGGAATCTCTCCTGCTCCTAAAGGACATCCTATATTGACATGCTTTGAGTTAGATGCCGATGGCATCCTTTGTGTAACTGCTGAGGAAAAGAGCACTGGTAATAAAAATCAGATTACCATAAAACTTGATGAAGGAAGACTTTCGGAGGAAGAAAAAGAAAGACTCATTGTGGAAGCTGAGAGATACAAGGTTGAAGATGAGATGTTTATGAAGAAAGCTAAAGCAATACGTGCTTTGGATGATTATGTTTATGACATGAAGAAAACCTTAAACGGTTCTGAGCTTTGTCCTGAGGATAAGAAGGAGTTAAATTCTGCAATTGATAAGGCTAGAACTCTGCTTGATGATGGTAACAAGGAGAAGAAAAAGATTGACGTGTTCGTGGAGCATCTTAAAGACGCTAAGCTCATTTTTGAGCCCATTAAAGCTAAGATTGGTTAG 1776 0.4122 MARKYKGHAVGIDLGTTYSCVAVWQEQHCRVEIIHNDQGNRTTPSYVAFTANQRFIGDAAKNQAAANPTNTVFDFKRLIGRKYSDPIVKNDILMWPFKVTAGADDKPMIVVTYKDQEKHFSAEEISSMVLTKMREIAEAYLESPVCLNVMMRIINEPTAAAIAYGLDKRSGCAKERNVFIFDLGGGTFDVSLLTIKDKVFKVKATAGNTHLGGEDFDSRLVSYFVKEFERKNKVDISGNARALRRLRTACEKAKRTLSYAVTATIELDAFYNGIDLYSSITRAKFEELNMELFRECVETVDQCLSDAKMDKASVHDVVLVGGSSRIPKVQELLQEYFKGKELCKSINPDEAVAYGAAVKAALLNGGTKSTAPDLVLQDVTPLSLGVGTKRDVMTVVIPRNTTIPLRKSKTFETAYDNQSSVDMKIYEGERARASDNNLLGKFTLSGISPAPKGHPILTCFELDADGILCVTAEEKSTGNKNQITIKLDEGRLSEEEKERLIVEAERYKVEDEMFMKKAKAIRALDDYVYDMKKTLNGSELCPEDKKELNSAIDKARTLLDDGNKEKKKIDVFVEHLKDAKLIFEPIKAKIG 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241900g00005 591 Pfam Hsp70 protein 148 568 IPR013126 GO:0005524|GO:0140662
Stsc241900g00005 591 Pfam Hsp70 protein 9 146 IPR013126 GO:0005524|GO:0140662
Stsc241900g00005 591 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 520 590 IPR029048 -
Stsc241900g00005 591 SUPERFAMILY Actin-like ATPase domain 9 168 IPR043129 -
Stsc241900g00005 591 Gene3D - 5 148 - -
Stsc241900g00005 591 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc241900g00005 591 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc241900g00005 591 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc241900g00005 591 PRINTS 70kDa heat shock protein signature 186 196 - -
Stsc241900g00005 591 PRINTS 70kDa heat shock protein signature 373 392 - -
Stsc241900g00005 591 PRINTS 70kDa heat shock protein signature 453 469 - -
Stsc241900g00005 591 PRINTS 70kDa heat shock protein signature 314 330 - -
Stsc241900g00005 591 PRINTS 70kDa heat shock protein signature 346 366 - -
Stsc241900g00005 591 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 372 520 IPR029047 -
Stsc241900g00005 591 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc241900g00005 591 Gene3D - 151 361 - -
Stsc241900g00005 591 PANTHER HEAT SHOCK PROTEIN 70KDA 9 554 IPR013126 GO:0005524|GO:0140662
Stsc241900g00005 591 Coils Coil 545 565 - -
Stsc241900g00005 591 FunFam Heat shock 70 kDa protein 367 521 - -
Stsc241900g00005 591 ProSitePatterns Heat shock hsp70 proteins family signature 3. 317 331 IPR018181 -
Stsc241900g00005 591 FunFam Heat shock 70 kDa protein 4 46 121 - -
Stsc241900g00005 591 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 369 521 IPR029047 -
Stsc241900g00005 591 FunFam Heat shock 70 kDa 212 295 - -
Stsc241900g00005 591 Gene3D - 169 343 - -
Stsc241900g00005 591 ProSitePatterns Heat shock hsp70 proteins family signature 2. 180 193 IPR018181 -
Stsc241900g00005 591 Gene3D - 522 591 IPR029048 -
Stsc241900g00005 591 Gene3D - 73 124 - -
Stsc241900g00005 591 Gene3D Actin; Chain A, domain 4 212 295 - -
Stsc241900g00005 591 SUPERFAMILY Actin-like ATPase domain 174 363 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241900g00005 Stsc-Chr241900 18101 20566 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241900g00005 1 590 Calmodulin-binding Proteins AT3G12580 62.802 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241900g00005 K03283 - gmx:102667578 800.431