Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241894g00006 ATGGCACTTGATGGATGCAAAGAACTCATGGAGTTCGCATTGAGCAGCCTTGAACTTTACTCCAATTTGCTTCAAAACAACGATATCAATTCTTTGCAAAACCAAATCCCCAACCTCAAGAATTGGATGACCTTTGAGGACAAAAATGAGGATGAGACGAAAATCAAGGAGCAACTACAAACGATGAGCTTGGACCGTGTTGAAAAGATATCCTTCATAACCTTGACAATTGTTACTGGATTGGAAAAGATTGTCGAAGATCTTGGGTTCAGTTTAGATGTCAAGAATAACGCTTTGCAACACCGTATTCTTCGCGAAGAGGTTAATAAGGAAGGGTTCCCAAGTTGGATCTCCAAATCTAATCGCATGCTCTTGGACCAAGAGGGGAACTCTCGTGTTATTCCCAATGTTGTTGTTGCTAAGGATGGTTGTGGAAATTTTAGGACCATTCAGGATGCAATTAACTCCTACCCAAAGAACAAGATTTTGAAGGGAAGATACATTATCTATGTTGTCATTGCACCGTTCCAACTAACGCAATAA 543 0.4033 MALDGCKELMEFALSSLELYSNLLQNNDINSLQNQIPNLKNWMTFEDKNEDETKIKEQLQTMSLDRVEKISFITLTIVTGLEKIVEDLGFSLDVKNNALQHRILREEVNKEGFPSWISKSNRMLLDQEGNSRVIPNVVVAKDGCGNFRTIQDAINSYPKNKILKGRYIIYVVIAPFQLTQ 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241894g00006 180 SUPERFAMILY Pectin lyase-like 135 173 IPR011050 -
Stsc241894g00006 180 Gene3D - 94 173 IPR012334 -
Stsc241894g00006 180 PANTHER PECTINESTERASE 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241894g00006 Stsc-Chr241894 42801 43387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241894g00006 1 161 Carbohydrate Esterase AT3G05610 32.317 7.23e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241894g00006 K01051 - gmx:100815015 149.058