Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241894g00004 ATGTGCGCATGGAATTCTACCGGAGTGATCTGGTACGATGAATGCATGGTTAGGTACTCCAACGAAAATTTCTTTGGGAAGGTGCAAATTAAGCCATTAACATTCATTTGGAACACTGACAAAAACAATAGAACTTCACCTTTTGAAAATCATCTTGATGCGCAAGCAGTGATGTACCGATTAATAAAACAATTGGACAACGATGACTCAGATAGGAATATGTTGTTCAACTCAAGGAAACCTGATGTGAATAATGAGTATGAGGGATATGGGTTTGTGCAATGTACAAGAGATATAAATCGGTCTTTATGTGCGTCTTGTTTGTGTCAGTTGATGGACAAAACAAAAGATTGTTGCCGAAGCAGAATTGGGTGGCGCTTACTAGCTCCTTCTTGCAATATTAGGTACGAGAAGTATATCTTCTATGAGGATAGTTTAGAGCCGCTAGTATCACCTACACCTAAACCGCAACTACCATCTGAAGTACCACCATATAATAGAAAGCACTTTCGAAAATTCCCTATAATCAACATGGTCATTCCAGTTACAAGTGTTGCCCTCCTTTTCTATCTTATCTGGTGTTTAACTCAACTCCGGGAAAGACGACAACAAGGGGAAGGGATTACTGACGTAATTCGAGTAAACAATTTGAAAAGTTCAATTAGTTCATGCTTTAAGGGTCAAGGAATGAATGTTACACACGAAGACAACAAAGGAGAAGTACAGTATTTTAGTTTGAGCACGATTAAGGTTGCTACCAACAGTTTTTCTGATGACACTAAGCTAGGTGAAGGGGGCTTTGGGCCCGTTTTCAAGGGGAAGTTAAGTGATGGCAAGGAAATAGCAGTTAAAAGGCTTTCATTCAAATCAAGGCAAGGACTTGAAGAATTCAAGAATGAAGTGACGTTGATTGCAAAGCTTCAACACAAAAATCTTGTTAGGCTCTTGGGATGCTGCCTTGATAGAAATGAGAAGCTTCTTGTATATGAGTACATGGTCAACACTAGTCTTGATGCTTTTTTATTTGATCAAAACAAACGTGAAAAGCTGGACTGGCCTAAGCGGGAAAAAATTATAAATGGAATTGAAAGAGGTCTTTCATATTTACACGAGGATTCCCGGCTAAAGATTATTCACAGAGATTTGAAAGCTAGCAACGTATTGTTAGATGAAGATATGAATCCAAAGATATCAGATTTTGGGACGGCTAGAATTTTTTATAATGAGCAAATTGTAGCAAGCACCGAAAAGGTTGTTGGTACATATGGTTATATGGCACCAGAATATGTTTTGGAAGGGTCGTTTTCCGTCAAATCTGATGTTTACAGCTTTGGAGTACTAATGTTGGAAATTTTAAGTGGGAGAAAGAACATTGGTTTCTACCAACCAGAGCTTCGTCGTGATCATACCTTAACTCTTATATCCTATGCATGGCGACTCTGGAGCGATGGCAAGGAGCTGGAATTTCTGGATCGTATCCTAGTCAACGCTTGCCCCATAGGTGTGGCAATGAGATGGATTCATATTGGACTCTTATGTGTTCAAGAAAATCCCAAACACAGGCCTACCATGTCCTCGGTTATTTTGATGCTTGGAAGTGCTACAACCCTTCCTCGACCACTTGCACCACCATTCTCTGCAAGCAACTATTATGATACAACTGATGACCAATCTTCGACAACTGAAGAAGATATGGAATTTCAACCCTCTTCCAGTAAAAGTAACCATACATGA 1734 0.395 MCAWNSTGVIWYDECMVRYSNENFFGKVQIKPLTFIWNTDKNNRTSPFENHLDAQAVMYRLIKQLDNDDSDRNMLFNSRKPDVNNEYEGYGFVQCTRDINRSLCASCLCQLMDKTKDCCRSRIGWRLLAPSCNIRYEKYIFYEDSLEPLVSPTPKPQLPSEVPPYNRKHFRKFPIINMVIPVTSVALLFYLIWCLTQLRERRQQGEGITDVIRVNNLKSSISSCFKGQGMNVTHEDNKGEVQYFSLSTIKVATNSFSDDTKLGEGGFGPVFKGKLSDGKEIAVKRLSFKSRQGLEEFKNEVTLIAKLQHKNLVRLLGCCLDRNEKLLVYEYMVNTSLDAFLFDQNKREKLDWPKREKIINGIERGLSYLHEDSRLKIIHRDLKASNVLLDEDMNPKISDFGTARIFYNEQIVASTEKVVGTYGYMAPEYVLEGSFSVKSDVYSFGVLMLEILSGRKNIGFYQPELRRDHTLTLISYAWRLWSDGKELEFLDRILVNACPIGVAMRWIHIGLLCVQENPKHRPTMSSVILMLGSATTLPRPLAPPFSASNYYDTTDDQSSTTEEDMEFQPSSSKSNHT 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241894g00004 577 ProSiteProfiles Protein kinase domain profile. 256 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241894g00004 577 SUPERFAMILY Protein kinase-like (PK-like) 239 562 IPR011009 -
Stsc241894g00004 577 Pfam Salt stress response/antifungal 41 139 IPR002902 -
Stsc241894g00004 577 MobiDBLite consensus disorder prediction 546 577 - -
Stsc241894g00004 577 SMART serkin_6 256 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241894g00004 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 377 389 IPR008271 GO:0004672|GO:0006468
Stsc241894g00004 577 Pfam Protein tyrosine and serine/threonine kinase 260 529 IPR001245 GO:0004672|GO:0006468
Stsc241894g00004 577 FunFam Uncharacterized protein 332 536 - -
Stsc241894g00004 577 Gene3D Phosphorylase Kinase; domain 1 230 331 - -
Stsc241894g00004 577 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 222 331 - -
Stsc241894g00004 577 Gene3D Transferase(Phosphotransferase) domain 1 332 538 - -
Stsc241894g00004 577 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 87 566 - -
Stsc241894g00004 577 MobiDBLite consensus disorder prediction 563 577 - -
Stsc241894g00004 577 CDD STKc_IRAK 262 531 - -
Stsc241894g00004 577 ProSiteProfiles Gnk2-homologous domain profile. 36 141 IPR002902 -
Stsc241894g00004 577 Gene3D - 33 141 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241894g00004 Stsc-Chr241894 24243 27496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241894g00004 2 574 Receptor kinase-like Gene Family AT4G05200 42.955 4.79e-148 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc241894g00004 PK_Tyr_Ser-Thr 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241894g00004 - - aip:107640338 671.389