Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241891g00001 ATGGATTCAAATTCTCAAGAAGCTGTGCAAGTGAATTCAGGTTCACAAATGGATGTAGATTCACATGAACAAGAAGAAGACATGCAAGTGGATTCAGAAGAAGCCGTGAAACAAGTCGATTCAGAATCACAAGAATCGACAACAGATATTTCTCTAATCATGACAAAACTCACTGCTTATATGAAAGTGATTAGGACTAATAACTCCACGGTGATCGACCCGACTTGTAACTACTTGGGACCATACCTTCGATCCGAAGAAATCGATGCCTCCAACTTTGTGATCAATGCAATTCATCCAGACATGATTGACAACCTCCAAGAAGCAGTTAAGCTCATGATCGACGCAGGCTTCGACAAAGAATGTTGCAATGAGTACAGCAAATTTCGCATGGCGTGCTTAACAAGTTGCCTGTCATATCTAAAAGGATTGCAGCCGAACCTTGAATCTCCGGAAACTGCTAAGAAGGGAACAAAGTTTTTTGATCATGAGATTAGGGAAGGGACTAAAGTTTCAAAGGTAATTGTGGGGGTTTTGCTTCCAAGTGAAATAACACTCTGCCAGAGAGTTTTCTTGGGCTACACGGAAGCTATGAATCTTGCTTTGATGGAAATTTGTAGGCCGTTGGTGATTCGCGTACTAGATTCTGCTGTTAATCAAGCAGTTGAACTTGCTCGCTCCAATAAAATTGAATTGTTTTCCAAGATCTCAAGAGTGATCAAAGCATTTCATGACTTGATTCCAGAGATTGAGTCGCTGTTTCCCGGGCCCGGGCCACTTGGAGATTCAATAAGAAATGAATACATCAACACTAGAAAGAGGTTGGAGAAAGCAACTATGGACATTCTTGAGAGGCTAGAGGATTGGATTTGCAATGAGAATGAGATGACATGTTTTTATGGCGGGCTCTATCCGATAATCTCTTGGGATGTGATGAACTGCCTGGGGGAAATTTGCCAAGCTTGGACAGCCATCAGCCTTGCAATGGTTGCTGATGAAGAAGGAAGTGCTCCTTGTTCTTCATTCTCTGATCAGTTTAATAGGATAATAGAGATGTTAAATAGTCATGTGGAGATTGAGTCTAAGAAATATACTGATCCTGCTGAGTGCTGTATTTTCATGATGAATAGTCAGAGGTATATACAGCAGAAGATAATAGAGTTTCAATCGAAAATGAGCACGATTTTCCCGAAGCTGAATGGCGCCATCGATGAAAATAATGCCATGGTAAGACAGAATCTTGAAGATTATCAAAGAAGCTCGTGGGATGAGGTTATTGGGCTTTTGAAGCATGGAGGTGGAGACCCAACTGCAGTGGAATCTATGAAGGAGAGTCTCAAATTGTTCAATGTGAAGTTTAAGGAAATATGCAGGGTTCAGTCTACATGGTTTGTCCTTGATGAACAGCTAAGAAAGGAAATAAGAGAGTCCATAGAGGAAATCTTGTTGCCAAGCTATGGAATCTTCATTGGTAAGTTGCAGAACTTTCTTGGTTCTGATGCAGATAAGTACATTGAGTATTCATTGTATGACATTGATGCTCTACTCAATGATTTGTTTCGTGGAGGCAATTGA 1575 0.4076 MDSNSQEAVQVNSGSQMDVDSHEQEEDMQVDSEEAVKQVDSESQESTTDISLIMTKLTAYMKVIRTNNSTVIDPTCNYLGPYLRSEEIDASNFVINAIHPDMIDNLQEAVKLMIDAGFDKECCNEYSKFRMACLTSCLSYLKGLQPNLESPETAKKGTKFFDHEIREGTKVSKVIVGVLLPSEITLCQRVFLGYTEAMNLALMEICRPLVIRVLDSAVNQAVELARSNKIELFSKISRVIKAFHDLIPEIESLFPGPGPLGDSIRNEYINTRKRLEKATMDILERLEDWICNENEMTCFYGGLYPIISWDVMNCLGEICQAWTAISLAMVADEEGSAPCSSFSDQFNRIIEMLNSHVEIESKKYTDPAECCIFMMNSQRYIQQKIIEFQSKMSTIFPKLNGAIDENNAMVRQNLEDYQRSSWDEVIGLLKHGGGDPTAVESMKESLKLFNVKFKEICRVQSTWFVLDEQLRKEIRESIEEILLPSYGIFIGKLQNFLGSDADKYIEYSLYDIDALLNDLFRGGN 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241891g00001 524 MobiDBLite consensus disorder prediction 1 18 - -
Stsc241891g00001 524 MobiDBLite consensus disorder prediction 1 44 - -
Stsc241891g00001 524 Gene3D Exocyst complex component Exo70 9 524 - -
Stsc241891g00001 524 PANTHER EXOCYST COMPLEX PROTEIN EXO70 44 522 IPR004140 GO:0000145|GO:0006887
Stsc241891g00001 524 Pfam Exo70 exocyst complex subunit 168 518 IPR046364 GO:0000145|GO:0005546|GO:0006887
Stsc241891g00001 524 SUPERFAMILY Cullin repeat-like 38 520 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241891g00001 Stsc-Chr241891 3972 5788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241891g00001 92 522 EXO70 exocyst subunit family AT5G58430 37.500 2.24e-80 261