Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241888g00006 ATGGCTTCCAACGGTATGCAAAACCAAGAAGAACTGCTTTCCAAGCAAATCAAACACGAAGAAGAAGAATATGATGATGATGATGATGATGATGATGATGATGATGATGAAGAAGAAGAAGAAGAAGAAGAAGGCGAAGAAGGATGGGACGACTGGGAAGGAGACGAGGGAGATCCACAATCGGAATTGCTCTGCCTCTTCTGTCATTCTAACTTCGCTTCTTGCGATTCCCTTTTCGCCCATTGCGCTTCCATTCACCACTTCGATTTCCATGCCATTCGAAAATCTCTTGCCTTGGATTTCTATTCCTCCTTCAAGCTTATTAACTATATCCGCTCTCAGGTGGCGGATAACAAATGTTGGAGTTGTGGTTCGACATGTCAGTCTAACCAAGACTTGCAGAATCATTTGCATGATGCAATTGACTTAAGTGATATAAAGACTAAGTGGGATGATGATAGATATTTAAAACCTTTTATGCTAGATGATTCGCTGTTGTACAGTTTTGTTGATTATGAAGATGGGGAAGATGAGCAAATTCCACCAATGGATGAAGATCTTATGGTGGATTTGAAGAACTCTATAGAAACTCTTGATTTGAAAAAAGTGGTAGTTACTGATGGTGTAAATGATACTAGTAGCAGCAAGAAGGCTGCTTCTGTTCCTAATGTTCATTTGAATCAGGAGAATTCTTCAGACAAGGAACTAGTTAATGGCAAGAACTCTGGACCATATGTTCCATCAATTGACGAGGCTAAAGATGAAGGGCTCTTGATGGCTAAATCTCGAAATCACATTGAAAAGCAGATTAAGATGGTTAATGAAAGTTACTTTGGGTCTTATAGCTCATATGGCATCCACCGTGAGATGTTAAGTGACAAGGTGAGAATGGATGCTTATGGCCAAGCAATTTTGAAAAATCCCTCTCTGCTAAATGGTGCTGTGGTTATGGATGTAGGTTGTGGAACTGGCATCCTGAGCCTATTTGCAGCTCGAGCAGGGGCTTCACGGGTCATTGCAGTTGAGGCTAGTACCAAGATGGCCGCAGTAGCATCTCAGGTTGCAAAAGATAATGGTCTCTGGCTGGATAAAAGCCAGTGTGGTGTGAATGGCCTTCAAAAGGGAGTGGTAGAAGTGATTCATGGTATGATTGAAGAAATTGACAAAACTGTTGGAATTAAACCTCACAGTGTTGATGTATTGTTAAGTGAATGGATGGGTTATTGCCTACTGTATGAATCCATGCTTGATTCTGTGCTCTATGCACGAGACCAGTGGTTGAAGACTGGAGGTGCCATTCTTCCTGACACAGCAACTATTTTTGTTGCAGGATTCGGAAAAGGTGGCACAAGTCTTCCATTTTGGGAAAATGTGTGTGAATTTGACATGTCTTGCATTGGGAAGGAACTTGTCAAAGATGCTGCCCAAATTCCTATAGTTGATGTTGTGGACTCTCAAGATTTAGTTACCAGTTCTGCAGTTCTTCAGACCTTTGATTTGGCAACCATGAAGCCTAATGAAGTTAATTTCACTGCAACTGCTACTTTGGAACCAAAATCGAGTGTTTCGGAAAACAAAGAAACACATGTAGATTCTGAAACATGCTGCCGGTGTTATGGAGTTGTCCTATGGTTTGAAACTGGATTTACAAGCAGATTCTGCCGGGAAGCACCAACTGTGTTATCAACATCTCCTTACACTCCAAAAACACATTGGTCGCAAACAATCTTAACCTTTAAGGAACCCATTGCAATTGGATTTGGAACCAGAAACAATGGTGATCTGGGAGTGGTCGGCACTGACAACTTTCCTGCTGCAAAGGTTGATTTGCGTATCAGCATTGTACGTTCCACGGAGCATCGCAGTATTGATATTTCGTTAGAAGCTGTTGGTGTTAGTCCTGATGGCCAGAGACGCAGTTGGCCAGCTCAATTGTTTTCTTTGCAGTAG 1950 0.4185 MASNGMQNQEELLSKQIKHEEEEYDDDDDDDDDDDDEEEEEEEEGEEGWDDWEGDEGDPQSELLCLFCHSNFASCDSLFAHCASIHHFDFHAIRKSLALDFYSSFKLINYIRSQVADNKCWSCGSTCQSNQDLQNHLHDAIDLSDIKTKWDDDRYLKPFMLDDSLLYSFVDYEDGEDEQIPPMDEDLMVDLKNSIETLDLKKVVVTDGVNDTSSSKKAASVPNVHLNQENSSDKELVNGKNSGPYVPSIDEAKDEGLLMAKSRNHIEKQIKMVNESYFGSYSSYGIHREMLSDKVRMDAYGQAILKNPSLLNGAVVMDVGCGTGILSLFAARAGASRVIAVEASTKMAAVASQVAKDNGLWLDKSQCGVNGLQKGVVEVIHGMIEEIDKTVGIKPHSVDVLLSEWMGYCLLYESMLDSVLYARDQWLKTGGAILPDTATIFVAGFGKGGTSLPFWENVCEFDMSCIGKELVKDAAQIPIVDVVDSQDLVTSSAVLQTFDLATMKPNEVNFTATATLEPKSSVSENKETHVDSETCCRCYGVVLWFETGFTSRFCREAPTVLSTSPYTPKTHWSQTILTFKEPIAIGFGTRNNGDLGVVGTDNFPAAKVDLRISIVRSTEHRSIDISLEAVGVSPDGQRRSWPAQLFSLQ 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241888g00006 649 Pfam Methyltransferase domain 316 431 IPR041698 -
Stsc241888g00006 649 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 280 590 IPR029063 -
Stsc241888g00006 649 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 66 629 IPR025799 GO:0016274|GO:0018216
Stsc241888g00006 649 SUPERFAMILY beta-beta-alpha zinc fingers 44 178 IPR036236 -
Stsc241888g00006 649 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 274 606 IPR025799 GO:0016274|GO:0018216
Stsc241888g00006 649 CDD AdoMet_MTases 316 434 - -
Stsc241888g00006 649 Gene3D Vaccinia Virus protein VP39 266 435 IPR029063 -
Stsc241888g00006 649 FunFam Protein arginine N-methyltransferase 6 270 435 - -
Stsc241888g00006 649 Gene3D - 437 640 - -
Stsc241888g00006 649 Coils Coil 3 23 - -
Stsc241888g00006 649 Pfam C2H2 type zinc-finger (2 copies) 65 139 IPR041661 -
Stsc241888g00006 649 MobiDBLite consensus disorder prediction 1 57 - -
Stsc241888g00006 649 MobiDBLite consensus disorder prediction 22 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241888g00006 Stsc-Chr241888 61308 65256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241888g00006 12 648 C2H2 Transcription Factor Family AT3G12270 53.566 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241888g00006 K11436 - gmx:100778113 870.922