Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241888g00003 ATGGGCTATTTATATCAGCCCGAACTGGGTGCAGTTCGCCGAGACATTAGGCGAACTGCACCCATGGTCACGATTCGCCGCATCACTAGGCGAACTAGAGACATATCAAGCAAGAATGTTTTGCTGTCCTCCAATCTTGAAGCTCGTGTCTCTGATTTCGGCACTACTAGGTTCTTGAAGCCAGATTCATCGATTTGGACATCCTTTGCAGGCTCATATGGCTATGCTGCTCCAGTTTTCTTACTGAGTGTCACAGAACTCGCTTACTCGATGGTAGTGAATGAGAAATCGGATGTGTTCAGCTTTGGTGTTTTGGCCTTAGAAGTAATTTCAGGAAAGCACCCTGCTGATCTTGTTCTTCACATACAAGCTTCTAGCGATTCAAATATAAACTTGAATGAGATTTTAGACCCACGCCTTTGGCATCCAACAAATGAGCATATTCTGAAAGAGTTGGCCTTGATTGCAAATATAAGTGTTTCATGTTTGCAGACAAGCCCTCAAATTCGACCAACCATGCGAAATATAGCTCGGCTGCTTGAAATAGAAGCTGCGGATAACTATTGA 567 0.4392 MGYLYQPELGAVRRDIRRTAPMVTIRRITRRTRDISSKNVLLSSNLEARVSDFGTTRFLKPDSSIWTSFAGSYGYAAPVFLLSVTELAYSMVVNEKSDVFSFGVLALEVISGKHPADLVLHIQASSDSNINLNEILDPRLWHPTNEHILKELALIANISVSCLQTSPQIRPTMRNIARLLEIEAADNY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241888g00003 188 Pfam Protein tyrosine and serine/threonine kinase 33 179 IPR001245 GO:0004672|GO:0006468
Stsc241888g00003 188 ProSiteProfiles Protein kinase domain profile. 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241888g00003 188 SUPERFAMILY Protein kinase-like (PK-like) 33 183 IPR011009 -
Stsc241888g00003 188 Gene3D Transferase(Phosphotransferase) domain 1 29 187 - -
Stsc241888g00003 188 PANTHER LEUCINE RICH REPEAT KINASE 2 33 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241888g00003 Stsc-Chr241888 25619 27115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241888g00003 33 180 Receptor kinase-like Gene Family AT5G65700 37.975 9.51e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc241888g00003 PK_Tyr_Ser-Thr 4.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241888g00003 - - ahf:112786571 247.284