Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241887g00010 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCACAAGAAGGGGAAAAGCGAGTTCTGGACTCTGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCTGCAGTTGGGAGCCGTGTGGTGTATTTTCCACAAGGTCACAGTGAACAGGTGGCAATGTCAACTAATAAGGAAGTAGATGCTCATATCCCCAACTATCCAAGCTTGCCACCTCAACTCATTTGTCAACTCCATAATCTTACTATGCATGCTGATGCTGAGACGGATGAAGTGTATGCACAGATGACCTTGCAACCTTTGAATCCTCAAGAGCAAAAGGAGGCATATCTTCCAGCAGAGTTGGGAAGTCCAAGCAAACAGCCAACAAACTATTTCTGCAAAACTTTGACAGCCAGTGACACAAGCACCCATGGGGGATTCTCTGTTCCTCGCCGGGCAGCAGAAAAAGTGTTTCCTCCACTGGATTTCTCTCAACAGCCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTTCGAGGCCAGCCTAAAAGGCATCTACTCACAACAGGATGGAGTGTTTTTGTTAGTGCTAAAAGGCTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGACAAGAACCAATTGCTTCTAGGCATCCGACGTGCTAATCGACCACAAACTGTGATGCCTTCCTCAGTGTTGTCTAGTGATAGCATGCATTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACTATATTCTATAATCCACGTGCTAGCCCTTCAGAATTTGTGATACCTTTGGCAAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGTTGTTTGAAACTGAGGAGTCCAGTGTGAGGCGATATATGGGCACAATAACTGGCATTAGTGACTTGGATCCTGCAAGGTGGCCAAATTCACATTGGCGTTCTGTCAAGGTTGGCTGGGATGAATCCACTGCAGGAGAGAGGCAACCAAGAGTGTCTCTATGGGAGATTGAGCCATTAACAACATTTCCTATGTATCCATCCCCATTTCCGCTTCGACTTAAACGACCTTGGCCACCAGGACTGCCCTCCTTCCATGGATTGAAGGATGAAGATTTTGGTATGAATTCTCCAATGATGTGGGTGAGAGACCCAGATAGGGGTCTTCAGTCTCTAAATTTTCAGGGGATTGGAGTTAGTCCTTGGATGCAGCCGAGATTTGATCCCTCCATGCTATATATGCAATCAGACATGTATCAAGCTGTGGCTGCAGCTGCACTTCAGGATATGAGGACTTCAGATCCTTCAAAACAGCATCCTTCTTCCTTACTTCAGTTTCAACAACCACAGAACTTCCCAAACAGGACTGCTGCTTTAATGCATTCACAGATATTGCAGCAATCACAACCTCAGCAAGCTTTCCAAATTAATCAAGAGAATCAGTCACCAAATCCAACACATGTTCAACAACGTCCACAGCACCAGAACTCATTCAATAGCCAGCTTCATCATCACAACAACCAGCAGCAGCAGCAGCAGCTGGTAGATAATCAGCAGATTTCCAATGGCGTGTCAACAATGTCTCAGTTTGTTTCAAGTTCAGCAACTCATCAGCCTCACTCACCACCTGTGCAAGCTATCTCTTCCTTGTGTCAACAGCAAAGCTTTTCGGATTCAAATGGGAATCCTGTTACCACTGCAAATGTTTCTCCTCTGCATAGTATCTTGGGTTCCTTTCCCCAGGAAGAAGCATCTCAGCTATTGAACCTACCTAGAAGTAGCTCTTGGATTCCAGTTCAAACATCAGCAGCATGGCCCTCGAAGCGAGTTGCGGTGGATCCTCTCCTTTCTTCCGGGGCATCTCAGTGCATTCTACCTCAGGTGGAGCAGTTGGGGCAGCTGCAGAGTACAATATCTGAAAATGTGGTTACATTGCCACCCTTTCCTGGTAGGGAGTGCTCAATAGACCAAGAAGGAAGCACTGATCCACATAACCACCTTTTATTTGGTGTTAATATAGAGCCCTCCACTCTCCTTGCCGCGGATTCTTCATTGAGTGGTGGCATGACACACAGCATTGGTGAATCAGGGTTCTTGCAGCCCTCAGAAAGCATGGGGCTAGCAAACTCCCCAAACAAAACCTTTGTCAAGGTTTATAAGTCAGGGTCCTTCGGAAGATCACTGGATATGAGTAAATTCAGCAGCTACCATGAGCTGAGGAGTGAACTAGCTCGAATGTTCGGGCTTGAAGGGGAGCTGGAGGACCCTTTAAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTTGGGGATGGCCCATGGCCGGAATTCGTAAATAGTGTATGGTGCATCAAGATACTTTCACCTCAGGAAGTGCATCAAATGGGAAACTCCGGCTTGGAGCTGTTGAACTCGAGGCTTGGTAACAGTTTCTGTGATGATGACTATGCCAACCGTCAAGACTCTAGAAGTTTAAGCACCGGAATAACATCCGTTGGCTCATTAGATTACTGA 2589 0.462 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAMSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGLKDEDFGMNSPMMWVRDPDRGLQSLNFQGIGVSPWMQPRFDPSMLYMQSDMYQAVAAAALQDMRTSDPSKQHPSSLLQFQQPQNFPNRTAALMHSQILQQSQPQQAFQINQENQSPNPTHVQQRPQHQNSFNSQLHHHNNQQQQQQLVDNQQISNGVSTMSQFVSSSATHQPHSPPVQAISSLCQQQSFSDSNGNPVTTANVSPLHSILGSFPQEEASQLLNLPRSSSWIPVQTSAAWPSKRVAVDPLLSSGASQCILPQVEQLGQLQSTISENVVTLPPFPGRECSIDQEGSTDPHNHLLFGVNIEPSTLLAADSSLSGGMTHSIGESGFLQPSESMGLANSPNKTFVKVYKSGSFGRSLDMSKFSSYHELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVHQMGNSGLELLNSRLGNSFCDDDYANRQDSRSLSTGITSVGSLDY 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241887g00010 862 MobiDBLite consensus disorder prediction 498 533 - -
Stsc241887g00010 862 Pfam AUX/IAA family 727 817 IPR033389 -
Stsc241887g00010 862 Gene3D - 291 363 - -
Stsc241887g00010 862 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Stsc241887g00010 862 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc241887g00010 862 Gene3D - 728 821 - -
Stsc241887g00010 862 SMART B3_2 127 229 IPR003340 GO:0003677
Stsc241887g00010 862 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Stsc241887g00010 862 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 821 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc241887g00010 862 Gene3D - 125 228 IPR015300 -
Stsc241887g00010 862 SUPERFAMILY CAD & PB1 domains 726 807 - -
Stsc241887g00010 862 FunFam Auxin response factor 727 821 - -
Stsc241887g00010 862 FunFam Auxin response factor 125 229 - -
Stsc241887g00010 862 FunFam Auxin response factor 291 363 - -
Stsc241887g00010 862 ProSiteProfiles PB1 domain profile. 732 816 IPR000270 GO:0005515
Stsc241887g00010 862 CDD B3_DNA 126 227 IPR003340 GO:0003677
Stsc241887g00010 862 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241887g00010 Stsc-Chr241887 26983 31770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241887g00010 1 483 B3 DNA Binding Superfamily AT1G30330 86.885 0.0 850
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc241887g00010 AUX_IAA 3.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241887g00010 - - gmx:100798719 1436.01