Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241887g00002 ATGTCAACCTCAACTCCTTTAAATAATCCTCGTTTCATTTGCCACGGTTTCCTACTTCCCATTCTTGTATTACTACTACTACTACAGATTTCATCTCAGCTTGGACACTGTGGTACCATTGTTAAGTACCTTCCGGGGTTCCAGGGACCACTTCCATTTCTTCTTGAAACCGGGTATATAGGAGTAGGGGAAAATGATGATGTCCAGACTTTTTACTACTTCATTGAGTCAGAGAACAATCCAAGGGAGGATCCTCTCATGCTATGGCTCACTGGTGGCCCTGGCTGCTCTGCTTTCTCTGGTCTTGTCTATGAAATAGGACCACTTGCATTTCAAGTTGATGAATATGATGGGGGCCTCTCCCTAATTTGGTGTATAGACCATACTCCTGGACAAAGGTGGAGACCCGATTGGTTGTCAGTCAATCAAACCTATCAATTTTTTAGGAAGTGGTTAATGGATCATCCAGAATTTCTCACAAACAAAGTTTACATTGCTGGTGATTCATACTCTGGTAAACTAGTTCCTGTAATTGCTGACGAAATTTCAAAAGGAAATGAACAAGGCCTCCAACCATGGATAAATCTCCAGGGATACCTGATGGGGAATCCTGTAATAGATGGAAATGTAGTAAACTATAGAATCCCATTTGCTCATGGGATGGGACTCATTTCTGATGAACTATACCAGTCACTGCTAAAACATTGTAAAGGAGAATACAAAAATGTCGACATCAGAAATGTATTGTGTTTAAGATATCTGAAGTCCTTTGATAAGATGAAATCAGGTATTAATACACCTCAGATTTTGGAGCCATTGTGTGAATTTGCCTCACCGAAGCCATCGAAATCTTCTTGGAGATCACTAACAGAAAACTATCCTTGGAAGTTCAATGACACTCATCTCAGATTACAATCAAGGGATTGTCGGACTTATGGATATCTCCTTAGTAGCTATTGGGCCAACGATGACAAAGTCTGTGATGCGCTTAATGTGCAAAAGGGAACTAAAAGGGAATGGCGACGCTGCACCAGAGAAATTCCTTATGAGATGGATATCCCTAGCAGCCTTCCATATCAAGTAAATCTCAGCAAAAAAGGCTATCGTTCACTGATTTACAGTGGGGATCATGACATGGTCGTTCCTTTCTTGGCAACTCAAGCACAGATAAGATCGTTAAACTACTCCATTGTGGATGATTGGAGGCCATGGTATACTAACGTCCAAGTTGCAGGATACACAAGGACTTACTCCAATGCAATGACATTTGCAACTGTGAAGGCTGCAGGGCACACAGCACCAGAGTACAAGCCTCAAGAATGCTTCCACATGTACACTAATTGGATCTCTGAGAGGCCTTTTTAG 1365 0.4168 MSTSTPLNNPRFICHGFLLPILVLLLLLQISSQLGHCGTIVKYLPGFQGPLPFLLETGYIGVGENDDVQTFYYFIESENNPREDPLMLWLTGGPGCSAFSGLVYEIGPLAFQVDEYDGGLSLIWCIDHTPGQRWRPDWLSVNQTYQFFRKWLMDHPEFLTNKVYIAGDSYSGKLVPVIADEISKGNEQGLQPWINLQGYLMGNPVIDGNVVNYRIPFAHGMGLISDELYQSLLKHCKGEYKNVDIRNVLCLRYLKSFDKMKSGINTPQILEPLCEFASPKPSKSSWRSLTENYPWKFNDTHLRLQSRDCRTYGYLLSSYWANDDKVCDALNVQKGTKREWRRCTREIPYEMDIPSSLPYQVNLSKKGYRSLIYSGDHDMVVPFLATQAQIRSLNYSIVDDWRPWYTNVQVAGYTRTYSNAMTFATVKAAGHTAPEYKPQECFHMYTNWISERPF 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241887g00002 454 Pfam Serine carboxypeptidase 141 450 IPR001563 GO:0004185|GO:0006508
Stsc241887g00002 454 Pfam Serine carboxypeptidase 45 114 IPR001563 GO:0004185|GO:0006508
Stsc241887g00002 454 SUPERFAMILY alpha/beta-Hydrolases 41 453 IPR029058 -
Stsc241887g00002 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 176 IPR001563 GO:0004185|GO:0006508
Stsc241887g00002 454 PRINTS Carboxypeptidase C serine protease (S10) family signature 421 434 IPR001563 GO:0004185|GO:0006508
Stsc241887g00002 454 FunFam Carboxypeptidase 308 453 - -
Stsc241887g00002 454 Gene3D alpha/beta hydrolase 127 276 IPR029058 -
Stsc241887g00002 454 Gene3D alpha/beta hydrolase 38 124 IPR029058 -
Stsc241887g00002 454 Gene3D - 309 454 - -
Stsc241887g00002 454 FunFam Carboxypeptidase 356 451 - -
Stsc241887g00002 454 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 40 438 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241887g00002 Stsc-Chr241887 6377 9588 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241887g00002 35 64 Calmodulin-binding Proteins AT2G22960 66.667 1.47e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241887g00002 K16296 - gmx:100792006 560.836