Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241887g00001 ATGATAGCAGAGAAAGTAGAGAGGCCTTTGAAAATGGCAACTTTATCTAATTCCATTTGCCATGGGTTCCTCCTTCCCATTATTTTACTATTACTGCAGTTTTCAGCTCAACATGTCAAGTGTGGCAAAATAGTGAAGTACCTCCCTGGGTTTGAGGGACCCCTTCCCTTTGTGCTTGAAACTGGGTATATAGGAGTAGGTGAAAATGAAGATGTGCAGGCCTTCTACTATTTCATTGAGTCAGAGAACAATCCAAGGGAGGATCCTCTCATGCTGTGGCTCACTGGTGGTCCTGGCTGTTCTGCTTTCTCTGGCCTTGCCTTTGAAATAGGTCCAATTACATTTAAAATTGAGGAATACAATGGCAGCCTGCCTAATTTGGTCTTGAGGCCACACTCATGGACAAAAGTAAGTAGCATTATATTTGTAGACTTGCCTGTAAATACAGGCTTCTCATATGCCAGAACAGAATCTGCATCTCACAGGACTGATTGGTCATTAGTTTACCAAACCCATCAATTTCTTAGGAAGTGGCTAATTGAGCATCCAGAATTTCTCACAAATGAAGTTTATGTTGGTGGTGATTCATACTCCGGAATTCCGATTCCTGTAATTACTCACACAATTTCTCAAGGAAATGAAGACGGAATACAACCGTGGATTAATCTTCAGGGATACCTGCTGGGGAATCCTTTAACAACCCGAACTGAAAAAAACTATAAAATCCCATTTGCTCATGGAATGGCACTTATTTCTGATGAACTATACCAGTCATTGCAAAAAAATTGCAGAGGAGAATTTACAAATGTAGACATTGCAAACGTGTTATGTACCCAAGATCTAAAGTCCTATGATGATAACGTATCAGGACTTTCTGAAAGCCATATTTTGGAACCAAAATGTGAGTTTGGTTCACCAAAGCCCTTCGATGTTCCTTGGAAGAGATCTCTGATTGATAACTATTCTTCAGAGTCTAACAATAATCGACTCGGATTGCCTCCTATAACTTGTCGGACTTATCCATACTTTCTCAGTAGTTATTGGGCTAATGATGGAGAGGTTCACAATGCCCTGGGCATACGTAAGGGAACCAAAGCCACATGGGAACGCTGTACCTATGATATACCTCACGAGGAGGATATCCCTAGCAGCTTTCCATATCATGTAAGGCTCAGTAAAAAAGGTTACCGTGCACTCATATACAGCGGCGATCATGACACGATGGTTCCTTACTTGGCAACTGAAGCATGGATAAAATCTTTAAACTACTCCATCGTGGAAGATTGGAGGCCGTGGCTCACAAATGGCCAAGTTTCAGGATACACAAGGACTTACTCCAATGCAATGACATTTGCAACTGTCAAGGGTGGTGGCCACACAGCTCCAGAGTATAAGCCTGAAGAATGCTTGGACATGTACAGTAGATGGCTGTCTAGGAGGCCTCTGTAG 1449 0.4217 MIAEKVERPLKMATLSNSICHGFLLPIILLLLQFSAQHVKCGKIVKYLPGFEGPLPFVLETGYIGVGENEDVQAFYYFIESENNPREDPLMLWLTGGPGCSAFSGLAFEIGPITFKIEEYNGSLPNLVLRPHSWTKVSSIIFVDLPVNTGFSYARTESASHRTDWSLVYQTHQFLRKWLIEHPEFLTNEVYVGGDSYSGIPIPVITHTISQGNEDGIQPWINLQGYLLGNPLTTRTEKNYKIPFAHGMALISDELYQSLQKNCRGEFTNVDIANVLCTQDLKSYDDNVSGLSESHILEPKCEFGSPKPFDVPWKRSLIDNYSSESNNNRLGLPPITCRTYPYFLSSYWANDGEVHNALGIRKGTKATWERCTYDIPHEEDIPSSFPYHVRLSKKGYRALIYSGDHDTMVPYLATEAWIKSLNYSIVEDWRPWLTNGQVSGYTRTYSNAMTFATVKGGGHTAPEYKPEECLDMYSRWLSRRPL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241887g00001 482 Gene3D alpha/beta hydrolase 39 307 IPR029058 -
Stsc241887g00001 482 Pfam Serine carboxypeptidase 49 478 IPR001563 GO:0004185|GO:0006508
Stsc241887g00001 482 FunFam Carboxypeptidase 336 481 - -
Stsc241887g00001 482 SUPERFAMILY alpha/beta-Hydrolases 45 481 IPR029058 -
Stsc241887g00001 482 Gene3D - 340 482 - -
Stsc241887g00001 482 FunFam Serine carboxypeptidase-like 11 39 482 - -
Stsc241887g00001 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 178 203 IPR001563 GO:0004185|GO:0006508
Stsc241887g00001 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 449 462 IPR001563 GO:0004185|GO:0006508
Stsc241887g00001 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 142 IPR001563 GO:0004185|GO:0006508
Stsc241887g00001 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 143 153 IPR001563 GO:0004185|GO:0006508
Stsc241887g00001 482 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 44 466 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241887g00001 Stsc-Chr241887 2819 5873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241887g00001 37 68 Calmodulin-binding Proteins AT2G22960 68.750 7.68e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241887g00001 K16296 - gmx:100792006 691.804