Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241885g00013 ATGGCGAAACCATTCTCTCTAACACACCACCTTTCCCTCCTACTCCTCCACACCCGTTCTCACCGTCTCTTCATTCCCACCACCACAGTCCTCCCTTTCCCTCTTCATCACCATCACCCCTTCTCTCTCTCCCCATTTCACAAACCCCTCTCTACCAACCCCACCCCATACCCTCTTCAATACGAACTCATCATAAATCGCCCTGTTCAAAAACACCCACCACGTGTTCGACGACATGCCCCACAAGCCCTCCCCGAACCCCACGAGCCAGACGAACCGGAGGAACAAGAACCCACTTCGGAGTTTCGCCTAGACAGCTGGGTCGACCGGAAATTGAGCTTTGACTCCGATTCTGGTCCACCCAGCTCGTCAAATTTGGAACTTGATAAGGCCAAGAGGAAGTACTACAACAAGAGAAGGAAGAGGATGTACGGGTCGGATTCAGAGGAAGAGGAAGCCCGGTCACGGAACGAGGAGAAGTTTGTGGAGCTGAAGCCTGAGGTAGTGGAGTTTCCAACTCTGCATCGTAGAGAAGAAGAATTGTATTTTTATGATGCTTTTGCTTACCCTTGGGAGAAGGAGAAACACTACAAGATGGTGTATCAGTTGGAGAAGAAATACTTCCCTGATCAATGCCTCGACAAGGCGTTTCTCAAACCGGGACAGTCGAATGCGAATGTGAATGCGAATTTAAATGAGAATGAGAATGAAAATGTAGATGGTGGTGTGAGGAGCAAGGGGAAGGGTAGGAAGCGTGCTGGTGTTAGTGGTGGTGGTGGTGTTAGAGGGGAGAAGAAGGATGATATGGGTGATGACAAGTTGGTGTTTTTTGATGAGAAGAGGGAAGATGAAAGGAAGGGTGATGGGGGTTTGGTGAAGGATCTTAAGGAGAAGAAGGTTGAGGAATTCTTTAAGGGTTTGAAGAGAGTTGACAAAAAGGATGGTGAAGTTAGTAGTGTCAATGCAGAGCCTTTTCTTTCGTCGAGGAGGACTGGACTCCCCCCGGTATGGGACAGTCCACATGGCACTGTTGTTTTGATTAACAAACCAAAAGGTTGGACCTCATTCACGGTTTGTGGTAAGCTACGCCGCATAGTTAAAGTAAAGAAGGTAGGCCATGCTGGAACTCTTGATCCCATGGCTACTGGTTTATTGATTGTTTGTGTTGGAAAAGCAACAAAACTGGTAGACAGATATCAAGGGATGATCAAGGGTTATAGTGGGGTCTTTCGTCTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAACACATCAAAGACGAGGACATAAAGAGAAATGCTGCATCCTTTTGCGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCTGCTATTAAAGTTGGAGGTGAAAGAATGTATGACAAGGCGAGGAGAGGAGAAAATGTTGAACTTTCGCCTAGACGAATCTCAATATTCCAGTTTGACATAGAGCGCAGCTTGGATGACAGAAAAAATTTGATTTTTAGAGTGACGTGTTCTAAAGGGACATATATTCGGTCATTGTGTGCGGATTTTGGGAAGGCTGTTGGCAGTTGTGCCCATTTAACTGCTCTGCGAAGAGATTCAATTGGGCAATATTCAGCAGATGATGCTTGGGATTTCCAAGAACTGGAAGAGGCTATCACCAAAAGTTACCTCTAG 1686 0.4686 MAKPFSLTHHLSLLLLHTRSHRLFIPTTTVLPFPLHHHHPFSLSPFHKPLSTNPTPYPLQYELIINRPVQKHPPRVRRHAPQALPEPHEPDEPEEQEPTSEFRLDSWVDRKLSFDSDSGPPSSSNLELDKAKRKYYNKRRKRMYGSDSEEEEARSRNEEKFVELKPEVVEFPTLHRREEELYFYDAFAYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLKPGQSNANVNANLNENENENVDGGVRSKGKGRKRAGVSGGGGVRGEKKDDMGDDKLVFFDEKREDERKGDGGLVKDLKEKKVEEFFKGLKRVDKKDGEVSSVNAEPFLSSRRTGLPPVWDSPHGTVVLINKPKGWTSFTVCGKLRRIVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNAASFCGEIWQVPPMFSAIKVGGERMYDKARRGENVELSPRRISIFQFDIERSLDDRKNLIFRVTCSKGTYIRSLCADFGKAVGSCAHLTALRRDSIGQYSADDAWDFQELEEAITKSYL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241885g00013 561 FunFam tRNA pseudouridine synthase B 338 560 - -
Stsc241885g00013 561 MobiDBLite consensus disorder prediction 141 159 - -
Stsc241885g00013 561 SUPERFAMILY Pseudouridine synthase 343 556 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Stsc241885g00013 561 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 206 559 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Stsc241885g00013 561 Gene3D Pseudouridine synthase 338 560 - -
Stsc241885g00013 561 Pfam tRNA pseudouridylate synthase B C-terminal domain 514 557 IPR032819 -
Stsc241885g00013 561 MobiDBLite consensus disorder prediction 139 159 - -
Stsc241885g00013 561 Pfam TruB family pseudouridylate synthase (N terminal domain) 363 513 IPR002501 GO:0006396
Stsc241885g00013 561 MobiDBLite consensus disorder prediction 227 267 - -
Stsc241885g00013 561 MobiDBLite consensus disorder prediction 68 102 - -
Stsc241885g00013 561 NCBIfam tRNA pseudouridine(55) synthase TruB 343 552 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Stsc241885g00013 561 Hamap tRNA pseudouridine synthase B [truB]. 341 561 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Stsc241885g00013 561 CDD PseudoU_synth_EcTruB 344 555 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241885g00013 Stsc-Chr241885 65205 69144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241885g00013 344 535 NAC Transcription Factor Family AT3G57150 33.333 2.43e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241885g00013 K03177 - qsa:O6P43_004707 697.582