Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241885g00006 ATGGGATCTGGTAATGAAGTTCATTCTGTTGGAGAGTTCAATTTAGATGCCAAGTGGCTTATAGATCCCAAACAACTCTTTGTTGGCCCAAAAATTGGGGAAGGTGCTCATGCCAAGGTCTATGAGGGAAAATATAAAAACCAGAATGTTGCTGTTAAGATTATCAACAAAGGAGAAACCCCGGAAGAGATTTCGCGGAGGGAAGCTCGGTTCGGCAGAGAGGTAGCCATGCTTTCGAAAGTTCAACACAAGAATCTGGTTAAGTTTATTGGAGCCTGCAAAGAACCAGTTATGGTTATAGTGACTGAACTTCTATTAGGCGGAACAATGCGCAAGTATCTCTTGAGTATGCGGCCAAATTGCTTGGATATGCGTGTGGCAGTTGGATTCGCTCTTGATATTGCTCGAGCAATGGAATGCTTACACTCCCACGGGATCATTCATCGAGACCTTAAGCCCGATAACTTGATCTTAACAGGAGATCATAAAACAGTTAAACTTGCTGATTTCGGTCTGGCAAGAGAGGAGTCTTTAACGGAGATGATGACTGCGGAAACCGGTACATACCGTTGGATGGCTCCCGAACTATATAGCACTGTAACTCTACGACAAGGCGAGAAGAAACATTACAACCATAAGGTAGATGCTTACAGTTTCGCGATTGTGTTGTGGGAGCTGATCCATAATAAGTTGCCGTTTGAAGGCATGTCAAATTTACAGGCGGCATATGCAGCTGCTTTTAAGAATACAAGGCCTAGTGCTGATGACCTTCCTGAGGATTTAGCAATGATTGTAACTTCATGTTGGAAGGAGGATCCGAATGACCGACCGAATTTCACGCAAATCATACAGATGCTCCTCCGATATCTCTCCACCATTTCTCCACAAGAACCAGTTGCTCCTCAGCGGATGAATTCAGCGGAGAATGCCGTATTGCCACCGGAATCCCCCGGCACAAGCGCATTAATGTCAAGGAGAGATGACTCCGGAGAAACCCCGAAAGCCGGTATGGGTATGGGTATGGAAGACAGACCTAAAGGGTTTTTCTTCTGCTTTAACCAGTGTTACTGA 1071 0.451 MGSGNEVHSVGEFNLDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEEISRREARFGREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTMRKYLLSMRPNCLDMRVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTGDHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSADDLPEDLAMIVTSCWKEDPNDRPNFTQIIQMLLRYLSTISPQEPVAPQRMNSAENAVLPPESPGTSALMSRRDDSGETPKAGMGMGMEDRPKGFFFCFNQCY 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241885g00006 356 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241885g00006 356 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Stsc241885g00006 356 MobiDBLite consensus disorder prediction 308 340 - -
Stsc241885g00006 356 SUPERFAMILY Protein kinase-like (PK-like) 18 311 IPR011009 -
Stsc241885g00006 356 FunFam serine/threonine-protein kinase HT1 107 308 - -
Stsc241885g00006 356 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 19 290 - -
Stsc241885g00006 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Stsc241885g00006 356 FunFam Kinase suppressor of Ras 1 15 105 - -
Stsc241885g00006 356 Gene3D Transferase(Phosphotransferase) domain 1 110 311 - -
Stsc241885g00006 356 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Stsc241885g00006 356 CDD STKc_MAP3K-like 32 286 - -
Stsc241885g00006 356 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Stsc241885g00006 356 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241885g00006 356 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Stsc241885g00006 356 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Stsc241885g00006 356 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Stsc241885g00006 356 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241885g00006 Stsc-Chr241885 39284 42822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241885g00006 9 356 MAP Kinase Kinase Kinase AT5G50180 77.011 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc241885g00006 PK_Tyr_Ser-Thr 1.2e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241885g00006 - - mnt:21403469 645.966