Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241885g00005 ATGGCTAGAAGCTGGATCATTGACATTGAAGGACTAGCAAAGAAAGTGAAGAACAATACACTGCCATTATCTGATCAAATCAAGGACATTGGAGCATACTGCGAATGTCCAAAATGTCATTATCTCATTGATCATACTGATGTTTCTCCTGAGTTGCCAGGCTTTCCGGCCGGCGTGAAGTTTGATCCTTCTGACGTAGAACTCTTAGAACATTTGGCAGCAAAATGTTGTGTTGGGAACAAAGAGGCTCATATCTTCATCAAAGATTTCATTCCAACTATAGAAGGAGACCATGGAATATGCTACACACATCCAGAAAATCTTCCAGGTGCTAAGAAAGATGGAGCCAGTGTTCATTTCTTTCACAAAACAACCAATGCATATGCTACCGGACAACGAAAGCGTCGAAAGATTAACCATGAAGAAGGCCTAAGTGAGGAGCATGTTCGCTGGCACAAGACCGGTAAGACCAAAGCTATAACAGACAATGGAGTACACAAGGGCTTCAAGAAGATCATGGTTCTTTACATAAGGCCTAAGAGAGGTGCAAAGCCGAATAAATCGGAATGGGTGATGCATCAATACCATCTAGGGAGTGAAGAAGGTGAGAAGGAAGGTGAATATGTGGTTTCAAAGATTTTCTATCAGAAGAAGAAGCAAACTAAGAAGAATAAGCAGAATCCATCTGTGGCTGAAGATTCTGTCATGGCATTACAAGCTAGTCCAAGAACACCAAACCCGAATCCACCAAAACGGCCTCGGACAGGAAAATATGCTGACTGTGATGACAATTTTGATGAAACTGACCTTATTCCTTTCACTCAGGATGGAAAGCATTCTATATATGGAGAATCACATGCCCCACCACCATCTCAAGTTCATGGTGATGACAATAATGGAGGCTTTAACAACTCAAATGTAGATACTTCTTCTGCTAACCTAAATGATTCTGATTTGAAGTCCAACAATCTGAAAGGCTTTGCTTGCAATGCAAATGCAAATGAAAGTGAAGTGTTTGGGAATGTGAATAATCTTGATCTTGATTACCCGGGACTGGACAATCTTCTTGATTTTGATCTTCCTAATTTGGAATCTTGTTCTGAGGAAAGTTTCCTTCAATGGCTGAACATACCAGAATAA 1140 0.407 MARSWIIDIEGLAKKVKNNTLPLSDQIKDIGAYCECPKCHYLIDHTDVSPELPGFPAGVKFDPSDVELLEHLAAKCCVGNKEAHIFIKDFIPTIEGDHGICYTHPENLPGAKKDGASVHFFHKTTNAYATGQRKRRKINHEEGLSEEHVRWHKTGKTKAITDNGVHKGFKKIMVLYIRPKRGAKPNKSEWVMHQYHLGSEEGEKEGEYVVSKIFYQKKKQTKKNKQNPSVAEDSVMALQASPRTPNPNPPKRPRTGKYADCDDNFDETDLIPFTQDGKHSIYGESHAPPPSQVHGDDNNGGFNNSNVDTSSANLNDSDLKSNNLKGFACNANANESEVFGNVNNLDLDYPGLDNLLDFDLPNLESCSEESFLQWLNIPE 379
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc241885g00005 379 ProSiteProfiles NAC domain profile. 55 216 IPR003441 GO:0003677|GO:0006355
Stsc241885g00005 379 FunFam NAC domain-containing protein 8 64 220 - -
Stsc241885g00005 379 Pfam No apical meristem (NAM) protein 56 197 IPR003441 GO:0003677|GO:0006355
Stsc241885g00005 379 MobiDBLite consensus disorder prediction 275 313 - -
Stsc241885g00005 379 Gene3D NAC domain 64 222 IPR036093 GO:0003677|GO:0006355
Stsc241885g00005 379 MobiDBLite consensus disorder prediction 238 262 - -
Stsc241885g00005 379 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 297 IPR044799 GO:0003700
Stsc241885g00005 379 SUPERFAMILY NAC domain 40 216 IPR036093 GO:0003677|GO:0006355
Stsc241885g00005 379 MobiDBLite consensus disorder prediction 296 313 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc241885g00005 Stsc-Chr241885 34571 38355 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241885g00005 36 218 NAC Transcription Factor Family AT1G28470 53.723 1.70e-64 206
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc241885g00005 NAM 4.1e-20 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241885g00005 - - ahf:112799760 488.804