Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241884g00001 ATGAATCCATCGCGCCGCAGAGGAAAGGCAATGGAATCCACCAAAATCACGCAGAGGAGAAGCCACCAAAATTATGCACAGAAGGGCCATGAAAAGCGAGCAGAGAAAAGAAGAAGGAGATGGCTTCGTGTTTTGGCGCGTGAGGGTGGCCGGATCCAGGCATCCATCCCCAGGTCAGTGTTCAAGAGGCATGGTAATTCTATCCAGGAGTTTAAGATGACCATTGTAACACCGGTTGCAGAACCTGCTTTCCCTCTGGAACCATTCCGTTTCCAGAATATTGCTGAGCTGTTATCCGCTGAAAGGATTGATGGGTCACAACTCATTGATGTTATTGCTGAGGTTATAGGAAAGGAAGATCCAAGGGAGCTCACCACTGTGCTTGGACATGAGACCAAGCGTTTAGCTTTGAAGATAAAAGATCTTGAGGGTAACACAGTTGAGGTTGTGTTGTTCGGGGGCTTGGTGGATCAGATTCGGCCACACATGGAAGATGGCCGCGTTGAGCCACTAATTGTAGTTTTACAGTACTTCAGGCCTAATAGATGGAAAGGTAAGACCTCAGTGCAGAGCCACTTCCAATACTCAAAATTGCACATTGATCCCACCCTAGGTGATGTTAGAGAATTCCGGACAAGGCTGATTGGTGACACAACTCCTGGCTCGGTGAGGATAGCCCAAGTTTCGTCCCAAGGAGGATCCACTAGAATTGCAGAGCTTCGGAGGGGAACTGCTATTGTTAAGACTATTGAACAAGTCATGGCCCTTGAGGAGGCGTGTCAAGTGTGGATTGCTGCTAGCATAATGTCTATAAATGCTGGGGAGAACGATTGGTGTTACCCGGCATGCACACAGTGTGAAAAGAAGGCGTGTCAAGTGTGGATTGCTGCTAGCATAATGTCTATAAATGCTGGGGAGAACGATTGGTGTTACCCGGTATGCACACAGTGTGAAAAGAAGGTTGAGGAGGGACAGAATGGAAAATATCTATGCAAAAGGTGTGAAACAGATGAAGCTGAAGCAGATTTAAAGTACAAGGTTGAGATCGTGGCATGTGATGGCACTGGAGGTATCTCTTTGCTATTATGGGATACCCAGGTTAGCCTCCTGTGTGGAAAAACTGCTGAACAGATAAAGATGGAAGCGGATGGACATGTGAAGGGAACTGACAATGTTTACTCTGTTGCTACCATGTGTGATGATGAAACTATTGTTTCTATGAATTTCCCAAATGATTTCGATGCAGGGACTTCAAATACATTTACGGATAATGGGTGTAGCAATGAGGTCAATGAGGATTCAGGTGTGATTAGTCTAAAGCAAAAAAATGGTGCTGGTGCTGGTGCTGATGTGGATAATGGGTGTAGCAATGAGGTCAATGAGGATTCAGGTGTGATTAGTCTAGAGCAAAAAAATGATGCTGGTGCTGATGTGAGCATGATTGAAGAGTCCGTGACAAACATAAAGTGCAAGACTCCTAGGAAAAGGTCTGTCGTAGGTGTGACGCATTGTGCTAACCAGCAGCAAGAACAAGAAGCGGATGGCCAGCTTTCAACAAATCGTTTCAGTAGAAAGGGATTGAAGAGAGGAAGATGCAACTAA 1602 0.4576 MNPSRRRGKAMESTKITQRRSHQNYAQKGHEKRAEKRRRRWLRVLAREGGRIQASIPRSVFKRHGNSIQEFKMTIVTPVAEPAFPLEPFRFQNIAELLSAERIDGSQLIDVIAEVIGKEDPRELTTVLGHETKRLALKIKDLEGNTVEVVLFGGLVDQIRPHMEDGRVEPLIVVLQYFRPNRWKGKTSVQSHFQYSKLHIDPTLGDVREFRTRLIGDTTPGSVRIAQVSSQGGSTRIAELRRGTAIVKTIEQVMALEEACQVWIAASIMSINAGENDWCYPACTQCEKKACQVWIAASIMSINAGENDWCYPVCTQCEKKVEEGQNGKYLCKRCETDEAEADLKYKVEIVACDGTGGISLLLWDTQVSLLCGKTAEQIKMEADGHVKGTDNVYSVATMCDDETIVSMNFPNDFDAGTSNTFTDNGCSNEVNEDSGVISLKQKNGAGAGADVDNGCSNEVNEDSGVISLEQKNDAGADVSMIEESVTNIKCKTPRKRSVVGVTHCANQQQEQEADGQLSTNRFSRKGLKRGRCN 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241884g00001 533 MobiDBLite consensus disorder prediction 1 36 - -
Stsc241884g00001 533 SUPERFAMILY Nucleic acid-binding proteins 292 382 IPR012340 -
Stsc241884g00001 533 Gene3D - 229 290 IPR012340 -
Stsc241884g00001 533 Gene3D - 291 422 IPR012340 -
Stsc241884g00001 533 MobiDBLite consensus disorder prediction 507 533 - -
Stsc241884g00001 533 Pfam Replication factor-A C terminal domain 297 383 IPR013955 -
Stsc241884g00001 533 MobiDBLite consensus disorder prediction 507 523 - -
Stsc241884g00001 533 SUPERFAMILY Nucleic acid-binding proteins 89 213 IPR012340 -
Stsc241884g00001 533 CDD RPA1_DBD_B_like 108 215 - -
Stsc241884g00001 533 Gene3D - 84 219 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241884g00001 Stsc-Chr241884 1913 6702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241884g00001 78 365 Core DNA Replication Machinery Family AT2G06510 23.973 3.33e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241884g00001 - - aip:107630584 332.413