Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241883g00001 ATGTTCATCAACATGTCACATGAGCTCAAGGAAGAAGGTAACAGGCTATATCAGAAGAAGGATCATGAAGGTGCCATGTTGAAGTTTGAGAAGGCTTTGAAGCTCTTACCGAAGAATCACATCGATGTAGCACACCTTCATACAAGTATGGCTGTCTGTTACATGCAAATGGGGCTAGGTGAGTACCCTCGTGCCATCAATGAATGCACTTTGGCTTTAGAAGTGTCACCTAGATATAGCAGGGCTCTGTTGAAGAGGGCAAAGTGCTATGCTTCGTTGAATCGGTTGGATTTGGCAATGAAGGATGTTAGGGTTGTTTTGAATTGGGAGCCTAATAACCTTACGGCATTAGAGATACAGGATAGTTTGAGAATCACAATGGAAGAGAAGGGTATCACTATTGATGAGACTGAGATTGCTTTGGCTACAATGGCGGAGCCTCCGGGCACACGGTTGCGGAAAGTGGTGAGGGAGAAGCTAAAGAAGAAGAAAGGTCCTCACCACCATAAAGGTGAGGAAAAGATGGATCATGATAAGGAGGTTGTGCACAAGGAGGTGCTGCAAAAGGAGCTTGTTCAGGAGAATGTGAAGAGTCATGTTAAGGATAAGGATAAGGAAAAGGAAAAGGAAGTAGTCAAGAACACAATTGAGAAAGAAAATTTGGAAGCGAAACTTGTTAAGAGGCGGGAAAAGGCTGTTACAAGGACAGTGAAGTTCATATATGGAGAGGATATAAGATGGGCGCAGCTGCCGGTGAATTGTAGTTTGAGGATGGTAAGGGATAAGATAAAGGAACGATTTCCAGGATTGAAGGGGGTTCTTGTGAAGTATAAGGACCGAGAAGGCGATATTGTTACAATAACCAATGTTGCTGATTTAAGGCTAGCTGAAAGTTCCGGTCATGTGCTCGGCTCGATTCGACTTTATATTACAGAAGTTGATCCTTCACAAGAACCATCTTATGATGATAAGATTGTGAGTGAGGTGCCAGCTTATGTTAGCAAATCAGATGAAGGTTTAGAGAGTGGAGCTAAGCAAAGAGGTGAACCGGTAGCAAACCCGGCTATTACTGTGGAGGACTGGCTTGTCCAGTTTGCAAGGCTTTTCAAGAACCATGTTGGGTTTGACTCCGATGCATATCTAGATATTCATGAGGTTGGGATGAAGCTATATTCCGAAGCAATGGAGGATACTGCATCAGATGAAGAAGCTCAAGAACTGTTTGAAATCGCAGCAGATAAATTTCAAGAAATGGCAGCTTTGGCATTGTTTAATTGGGGGAATGTTCACATGTCTAGAGCAAGGAAGCTTGTGTCCTCCGCAGAGGATGGATCAAGAGAGTCTTTGGAGAATATCAAATCTGCTTATGACTGGGCTCAAAATGAGTACATAAAAGCAGAATCAAGATATGAAGAAGCCTTGAGAATCAAACCCGATTTCTACGAAGGACTTCTTGCACTCGGGTATCAGCAGTTTGAGCAAGCAAGGCTCCGGTGGTGTTATTCTTTGGCAACCAATAAGGAGTTGGACATTGGCGCGTCCGAAGAGGTTCTGCAGTTCTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATGTTGATGTGGGAAGAGATTGAGGAGCAGCGTTTGAATGGATTATCCAAACTTGATAAATATAAAGCAGAGTTACAGAAAATGGATTTGCATAATCTTTTCAGGGATGTTTCTCCCGAGGAATCCGAAGAGCAGGCTTCAAAGATGAGATTACAGATATATCTTTTATGGGGAACTTTGTTGTATGAGCGCTCTGTTGCTGAATATAAGCTAGGCCTGCCTACATGGGAGGAATGCTTGGAAGTTGCTGTTGAAAAGTTTGAACTGGCCGGAGCTTCTTCGGCCGATATTGGTGTCATGATAAAGAATCACTGTTCTAATACAACAGCACTTGAAGGGTTCAAAATCGACGAGATAGTGCAGGCGTGGAATGAGATGTATGATGGGTGGCAATTTGATGTTCCATCGTTTCGACTTGAATCGTTGTTTCGTCGGCGTGTTCCAAAACTACATGACATCTTGGAGCAATTTTGA 2067 0.4325 MFINMSHELKEEGNRLYQKKDHEGAMLKFEKALKLLPKNHIDVAHLHTSMAVCYMQMGLGEYPRAINECTLALEVSPRYSRALLKRAKCYASLNRLDLAMKDVRVVLNWEPNNLTALEIQDSLRITMEEKGITIDETEIALATMAEPPGTRLRKVVREKLKKKKGPHHHKGEEKMDHDKEVVHKEVLQKELVQENVKSHVKDKDKEKEKEVVKNTIEKENLEAKLVKRREKAVTRTVKFIYGEDIRWAQLPVNCSLRMVRDKIKERFPGLKGVLVKYKDREGDIVTITNVADLRLAESSGHVLGSIRLYITEVDPSQEPSYDDKIVSEVPAYVSKSDEGLESGAKQRGEPVANPAITVEDWLVQFARLFKNHVGFDSDAYLDIHEVGMKLYSEAMEDTASDEEAQELFEIAADKFQEMAALALFNWGNVHMSRARKLVSSAEDGSRESLENIKSAYDWAQNEYIKAESRYEEALRIKPDFYEGLLALGYQQFEQARLRWCYSLATNKELDIGASEEVLQFYNKAEDSMEKGMLMWEEIEEQRLNGLSKLDKYKAELQKMDLHNLFRDVSPEESEEQASKMRLQIYLLWGTLLYERSVAEYKLGLPTWEECLEVAVEKFELAGASSADIGVMIKNHCSNTTALEGFKIDEIVQAWNEMYDGWQFDVPSFRLESLFRRRVPKLHDILEQF 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241883g00001 688 SMART PB1_new 234 313 IPR000270 GO:0005515
Stsc241883g00001 688 Pfam PB1 domain 234 310 IPR000270 GO:0005515
Stsc241883g00001 688 SUPERFAMILY TPR-like 6 497 IPR011990 GO:0005515
Stsc241883g00001 688 ProSiteProfiles TPR repeat profile. 6 39 IPR019734 GO:0005515
Stsc241883g00001 688 Gene3D - 233 302 - -
Stsc241883g00001 688 Coils Coil 449 469 - -
Stsc241883g00001 688 Gene3D Tetratricopeptide repeat domain 4 131 IPR011990 GO:0005515
Stsc241883g00001 688 SUPERFAMILY CAD & PB1 domains 234 321 - -
Stsc241883g00001 688 Gene3D Tetratricopeptide repeat domain 368 620 IPR011990 GO:0005515
Stsc241883g00001 688 ProSiteProfiles PB1 domain profile. 234 313 IPR000270 GO:0005515
Stsc241883g00001 688 SMART tpr_5 6 39 IPR019734 GO:0005515
Stsc241883g00001 688 SMART tpr_5 80 113 IPR019734 GO:0005515
Stsc241883g00001 688 SMART tpr_5 44 79 IPR019734 GO:0005515
Stsc241883g00001 688 PANTHER PROTEIN CLMP1 1 686 IPR044517 -
Stsc241883g00001 688 CDD PB1 236 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241883g00001 Stsc-Chr241883 2880 6740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241883g00001 3 129 Calmodulin-binding Proteins AT3G25230 28.676 1.72e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241883g00001 K26538 - qsa:O6P43_015720 901.353