Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241882g00002 ATGGAGCTTCGTTCTCGTCGCCTCACGCAGACCGCACTTCCTGGACCAGGGACGGGGAAGCAACCGAGGGATACCACTGAAGGAGTTGAAACTAACGATATGGATGGAGATGCTTATGTAGTATCTTCGGATTCCAATTATGAAGATGAAGAGTTCGATGGGAACATTGTCTTGGACTTGAATCAAGATCCAACTTTAAGCATTAGTGTTTCTGACATGGTTGATTACTCTTCTGATTCATCTGATGGTAGCAAGCCTTTATACCGAAGGGGAAAGGCGCAGTCCAGAAAGAGAAGAAAGACACACAACTCGAGAAATGAAGAACTTATTGATGTAGAGATTCAGCCAGAAGTTGTTGTCAATTTGGTTAATAACCGAAAGAAGAAAAAAGCAAGGAAAAACAGAAAGGGGGATTCTGACAAAGTATTACTATGGCATGCTTGGGAAGAGCAGCATGAAAGGTGGATCGATGAGAATTTATCAGCAGATGCTAACTTAGATCATCAAAGTGAAGAAATGAATGAAACTGCTGAGCCATCCTCGGATCTGACTATGCCTTTGTTGAGGTACCAAAAGGAATGGTTAGCATGGGCTTTGAAGCAGGAAAGTTCTGTGTCAAGAGGAGGAATCCTTGCAGATGAGATGGGGATGGGGAAGACTATTCAAGCAATTACCCTAGTCCTAGCTAAACGTCAATTCCAGCAAAAGATTTGTGAGCAAGATGAACCTGCACCTGTGGCAGGTTCATCTAGAGTCTTACCTGCTATCAAAGGAACACTTGTTATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAATGAGATTGATAGATTTACTTTGAAAGGAAGCACCAAGGTCCTGGTTTATCATGGGGCGAGGAGAGGAAAGAATATTGAACAGTTATCTGAGTATGATTTTGTAATAACAACCTACTCTATCGTGGAGTCCGAGTACAGAAAATATATGATGCCTCCTAAGGAAAAGTGCCCATATTGTGGAAAATTATTTTATCTGAATAAGTTACCTTATCACCAAAAGTACTTTTGTGGACCTGATGCTGAGAGAACAGAAAAGCAATCAAAACAAATGAAGAGAAAGAAAAAGTTTGCTTCAAAACAGAAGATAAAAGATCCTGAGAATTGGAATGAAGAATTGGAGCAAGAGGGTTTTGACAAGAAAAAGAAAGAGAAAATGGTCTCAGGAATGGATCCTTTAGACGCCACTGACAGGGAGAAATCATTTCTTCATGCTGTGAAGTGGCAGCGGATAATATTGGATGAGGCACACTACATAAAGTCAAGACACTGTAACACTGCAAAAGCTGTTCTTGCCTTAGATTCTTCCTACAGATGGGCGCTCAGTGGCACTCCCCTTCAGAACCGTGTTGGAGAGCTGTATTCTCTGGTTCGGTTTTTGCAAATTGTTCCTTATTCCTATTACTTCTGCAAGGACTGTGACTGCCGGGCTCTTGATCATAGCTCCTCTAAACAATGTGCAGTTTGTGGTCACAGTTCTGTTAGACATTTTTGTTGGTGGAACAAATATGTTGCCACCCCAATTCAATCGTATGGATATGGTGATTGTGGAAGAAGAGCTATGATATTGCTTAAACACAAAATTTTAAAGAACATAGTTCTAAGGCGAACTAAAACAGGCAGGGCTGCCGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGGAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCCTTATACAATGAAAGTCAGGCACAGTTTAACACATATGTTGAGGAAAATACTTTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTTCGTCAGGCTGTTGATCATCCATATCTTGTGGTATATTCTCAAACTACTGCATTAAGAGAAGGTAACTTGTCTACTAATGGTAATGTTGAACAAGCTTGTGGCCTGTGTCATGAGCCAGTAGAAGTTCCTGTTGTTACCTCTTGTGAGCATACCTTTTGCAAGGCATGCTTGATAGACTTTTCTGCTTCCTTGGGACAAGTATCATGCCCCACATGTTCTAAGTTACTTACTGTTGATTTAACTTCAAACAAGGATGTTGGGGCTCAGGTTAATAAAACAACCATTAAAGGTTTCAGATCCTCCAGCATTCTAAACCGAATTCGGCTTGAGAACTTTCAGACCAGCACTAAAATTGAGGCACTGAGAGAAGAAATCAGATTGATGGTTGAAAGAGATGGATCTGCGAAAGGGATTGTTTTTAGTCAATTCACGTCATTCCTGGATCTCATAAATTACTCCCTGCACAAGTCAGGTGTATCTTGTGTTCAATTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTAAGAGATTTACTGATGATCCAGACTGCAAAATTTTCCTTATGAGCTTGAAGGCCGGGGGTGTTGCTCTCAATTTAACAGTTGCATCACATGTTTTCTTGATGGACCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACAGAATTCACCGGATAGGGCAATATAAGCCAATCAGAATTGTCAGATTTGTCATTGAAAACACAATTGAGGAGAGGATTTTAAAGCTGCAAGAGAAAAAAGAACTAGTATTTGAAGGGACTATTGGCGGCTCCTCAGAGGCGCTGGGGAAATTGACGGAGGCTGACTTGAAGTTCCTCTGTTACCTAAGCTAG 2706 0.4143 MELRSRRLTQTALPGPGTGKQPRDTTEGVETNDMDGDAYVVSSDSNYEDEEFDGNIVLDLNQDPTLSISVSDMVDYSSDSSDGSKPLYRRGKAQSRKRRKTHNSRNEELIDVEIQPEVVVNLVNNRKKKKARKNRKGDSDKVLLWHAWEEQHERWIDENLSADANLDHQSEEMNETAEPSSDLTMPLLRYQKEWLAWALKQESSVSRGGILADEMGMGKTIQAITLVLAKRQFQQKICEQDEPAPVAGSSRVLPAIKGTLVICPVVAVTQWVNEIDRFTLKGSTKVLVYHGARRGKNIEQLSEYDFVITTYSIVESEYRKYMMPPKEKCPYCGKLFYLNKLPYHQKYFCGPDAERTEKQSKQMKRKKKFASKQKIKDPENWNEELEQEGFDKKKKEKMVSGMDPLDATDREKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYFCKDCDCRALDHSSSKQCAVCGHSSVRHFCWWNKYVATPIQSYGYGDCGRRAMILLKHKILKNIVLRRTKTGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYVEENTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQTTALREGNLSTNGNVEQACGLCHEPVEVPVVTSCEHTFCKACLIDFSASLGQVSCPTCSKLLTVDLTSNKDVGAQVNKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRLMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIKRFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSEALGKLTEADLKFLCYLS 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241882g00002 901 CDD DEXDc_SHPRH-like 187 548 - -
Stsc241882g00002 901 ProSiteProfiles Zinc finger RING-type profile. 646 686 IPR001841 -
Stsc241882g00002 901 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 726 890 IPR001650 -
Stsc241882g00002 901 CDD SF2_C_SNF 728 855 - -
Stsc241882g00002 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 897 IPR027417 -
Stsc241882g00002 901 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 72 897 - -
Stsc241882g00002 901 Pfam Helicase conserved C-terminal domain 730 844 IPR001650 -
Stsc241882g00002 901 Pfam Zinc finger, C3HC4 type (RING finger) 646 685 IPR018957 GO:0046872
Stsc241882g00002 901 MobiDBLite consensus disorder prediction 74 105 - -
Stsc241882g00002 901 MobiDBLite consensus disorder prediction 1 39 - -
Stsc241882g00002 901 Gene3D - 352 564 IPR038718 -
Stsc241882g00002 901 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 475 IPR014001 -
Stsc241882g00002 901 Coils Coil 353 373 - -
Stsc241882g00002 901 SMART ring_2 646 685 IPR001841 -
Stsc241882g00002 901 Gene3D - 189 329 IPR038718 -
Stsc241882g00002 901 SMART helicmild6 761 844 IPR001650 -
Stsc241882g00002 901 ProSitePatterns Zinc finger RING-type signature. 661 670 IPR017907 -
Stsc241882g00002 901 Gene3D - 565 897 IPR027417 -
Stsc241882g00002 901 Pfam SNF2-related domain 202 623 IPR000330 GO:0005524|GO:0140658
Stsc241882g00002 901 SUPERFAMILY RING/U-box 641 690 - -
Stsc241882g00002 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 548 IPR027417 -
Stsc241882g00002 901 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 710 IPR013083 -
Stsc241882g00002 901 SMART ultradead3 183 493 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241882g00002 Stsc-Chr241882 24149 31818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241882g00002 116 897 RAD5 or RAD16-like Gene Family AT1G05120 66.922 0.0 1076
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc241882g00002 SNF2_N 8.5e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241882g00002 K15083 - gmx:100786366 1295.8