Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241881g00003 ATGGGCGCGTGCTTCTCCGCATCTAAAGTCGTTAGCGGATCCAATACGACGTCGCATCACAACAAACACAAACAGCAGCATCGGCATCAGCAGCAGAGGCCAACGCACAAGCACGTGCCGTGCGGCAAGCGAACCGATTTCGGTTACGACAAAGACTTCGATGAACGTTACTCGCTTGGCAAGTTGTTAGGTCATGGTCAATTCGGTTACACCTATGTCGGAATTCACAAAGAGGATGGACACCGCGTCGCCGTTAAGAGGCTCGATAAGGCAAAGATGGTTCTTCCTATAGCTGTGGAGGACGTTAAGCGAGAGGTCAAGATACTGAAAGCGCTTGCTGGCCATGAGAATGTGGTTCAGTTCTACAATGCTTTTGAAGATGATTCCTATGTGTACATAGTTATGGAGTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGAACAGTCGTTATAGTGAAAAGGATGCTGCAGTGGTTGTAAGGCAGATGCTCAAGGTTGCTGCTGAGTGTCATTTACATGGTTTGGTACACCGGGACATGAAACCAGAGAACTTCCTTTTCAAATCAACCAAAGAAAATTCACCTTTAAAGGCTACAGATTTTGGTTTGTCAGATTTCATAAAACCTGGAAAAAAATTTCATGATATAGTTGGCAGTGCTTACTATGTTGCGCCTGAAGTGTTAAAGCGCAAGTCAGGCCCTGAATCTGATGTGTGGAGCATAGGTGTTATTACATACATATTATTGTGTGGGAAACGTCCATTTTGGGATAAGACTGAGGATGGTATTTTCAAGGAGGTCTTACGCAACAAGCCTGATTTCCGCAGGAAACCATGGCCAACTATAAGCAATGCAGCAAAGGATTTTGTGAAGAAATTGTTGGTTAAGGATCCTAGGGCAAGATTAACTGCTGCTCAGGCTTTGTCACATCCATGGGTTAGAGAAGGAGGAGAAGCATCAGAGATTCCTATTGATATATCTGTTCTGAGCAACATGCGGCAGTTTGTGAAGTATAGTCGATTGAAACAATTTGCACTGAGGGCATTGGCTAGTACACTTAATGAAGAAGAGTTGGCTGATCTAAGAGATCAATTTGATGCGATCGATGTGGACAAAAATGGTTCAATTAGTCTGGAAGAGATGAGACAGGCTCTAGCTAAAGATCTACCTTGGAAGTTGAAAGAATCACGCGTTCTAGAGATATTGCAAGCAATAGATAGCAACACAGATGGGTTAGTGGATTTCACTGAATTTGTTGCTGCTACATTACACGTGCACCAATTGGAGGAACATGACTCTGCAAAGTGGCAGCGACGGTCTCAGGCTGCTTTCGAGAAATTCGACATAGACAAGGATGGATATATTACTCCGGAGGAACTAAGAATGCATACTGGATTAAGGGGTTCCATTGATCCTCTGCTTGAGGAGGCTGACATTGACAAAGATGGAAAAATCAGCCTTCCAGAATTTCGCAGACTCCTAAGAACTGCAAGCATTGGTTCTCGGAATTTGCCAAGCCCCAGCAGCAATCGGCGTCATACGATCTTAGAATAG 1566 0.4444 MGACFSASKVVSGSNTTSHHNKHKQQHRHQQQRPTHKHVPCGKRTDFGYDKDFDERYSLGKLLGHGQFGYTYVGIHKEDGHRVAVKRLDKAKMVLPIAVEDVKREVKILKALAGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKNSRYSEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKENSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGKRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLSNMRQFVKYSRLKQFALRALASTLNEEELADLRDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSAKWQRRSQAAFEKFDIDKDGYITPEELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRNLPSPSSNRRHTILE 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241881g00003 521 FunFam CDPK-related kinase 1 50 142 - -
Stsc241881g00003 521 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Stsc241881g00003 521 CDD STKc_CAMK 56 316 - -
Stsc241881g00003 521 FunFam calcium-dependent protein kinase 28-like 143 336 - -
Stsc241881g00003 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 486 - -
Stsc241881g00003 521 Gene3D - 358 427 - -
Stsc241881g00003 521 SUPERFAMILY Protein kinase-like (PK-like) 54 331 IPR011009 -
Stsc241881g00003 521 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Stsc241881g00003 521 MobiDBLite consensus disorder prediction 1 43 - -
Stsc241881g00003 521 Gene3D - 339 497 - -
Stsc241881g00003 521 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Stsc241881g00003 521 ProSitePatterns EF-hand calcium-binding domain. 373 385 IPR018247 -
Stsc241881g00003 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Stsc241881g00003 521 Gene3D Transferase(Phosphotransferase) domain 1 143 338 - -
Stsc241881g00003 521 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Stsc241881g00003 521 SMART efh_1 443 471 IPR002048 GO:0005509
Stsc241881g00003 521 SMART efh_1 401 429 IPR002048 GO:0005509
Stsc241881g00003 521 SMART efh_1 364 392 IPR002048 GO:0005509
Stsc241881g00003 521 SMART efh_1 473 501 IPR002048 GO:0005509
Stsc241881g00003 521 Gene3D Phosphorylase Kinase; domain 1 50 142 - -
Stsc241881g00003 521 Pfam EF-hand domain pair 446 498 IPR002048 GO:0005509
Stsc241881g00003 521 Pfam EF-hand domain pair 364 426 IPR002048 GO:0005509
Stsc241881g00003 521 MobiDBLite consensus disorder prediction 20 38 - -
Stsc241881g00003 521 SMART serkin_6 57 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241881g00003 521 ProSiteProfiles Protein kinase domain profile. 57 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241881g00003 521 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Stsc241881g00003 521 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Stsc241881g00003 521 ProSiteProfiles EF-hand calcium-binding domain profile. 477 504 IPR002048 GO:0005509
Stsc241881g00003 521 Pfam Protein kinase domain 57 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241881g00003 521 FunFam Calcium-dependent protein kinase 18 325 502 - -
Stsc241881g00003 521 SUPERFAMILY EF-hand 346 500 IPR011992 -
Stsc241881g00003 521 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241881g00003 Stsc-Chr241881 31704 36335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241881g00003 17 511 EF-hand Containing Proteins AT2G17890 84.040 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc241881g00003 Pkinase 8.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241881g00003 K13412 - gmx:100798941 893.264