Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241875g00001 ATGAAGGATTTTTTGTTTTTGGACAACAATTTGAATGGGGTATCTGATGAAGTTCTTGATGTGGTGGAGTTTTTTAATTTCAAATTAGAAGACGTGGGAGATGATGTTGTGGAGGAAGATTGTTTTGCTCAGCTTAAACAACTCGAAGTGCCATCTCTCGGTCTGTTTTCGGTATCACCATCCGGGTTATGTGACAAAACTGAGAATGAGAATCCAAAACTTGGGAGGAGTAGCTCTACTCCTCTGGCGGATACTGCTCGGCCGACGACGTATGGCAAAACTATTCGGAACCAGAATGTCTCTTTTAATGGGAAGAGTGTGCCCAAGTGCCAAACCTACAGCCCTGTGTCTGTCTTCGAAAGCAGTAGTTCCTCCTCAGTTGAGAACTCCAACTTTGATCTACCTGTCATACCGGAAAAGCGTCCTCGAGGCAAACGCCGGCCGCGCTCAAGCTACAGGGAACTATTATCTGTTCCATTCTTCTATAACTCCCCAAAAGTTGAGGCGAACGATTTCTCTGGATCAAATTTACGAACACAACATGGTGGTAAATCATTAAGCAGTCTCAAAAAGAAGCATAGGAATAAGGATCTTCCCTTGCCTTCAGATCATACTGAGAAGAAGAGATCTGCATCACAAGGGTCAGTTACCCACCGAAAATGCATGCATTGTGAGGTGACATCAACGCCGCAGTGGAGAGAAGGGCCTATGGGTCCAAAGACACTTTGCAATGCTTGTGGGGTTCGGTATAGGTCTGGCCGGCTCTTCCCTGAGTATCGGCCTGCAGCTAGCCCTACGTTTGTAGCATCATTGCACTCGAACTCTCACAGGAAGGTCATCGAAATGAGAAGCCGAAGAGCGAAAGAGACTCTTAAGGATTCTTGA 885 0.4599 MKDFLFLDNNLNGVSDEVLDVVEFFNFKLEDVGDDVVEEDCFAQLKQLEVPSLGLFSVSPSGLCDKTENENPKLGRSSSTPLADTARPTTYGKTIRNQNVSFNGKSVPKCQTYSPVSVFESSSSSSVENSNFDLPVIPEKRPRGKRRPRSSYRELLSVPFFYNSPKVEANDFSGSNLRTQHGGKSLSSLKKKHRNKDLPLPSDHTEKKRSASQGSVTHRKCMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNSHRKVIEMRSRRAKETLKDS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241875g00001 294 MobiDBLite consensus disorder prediction 171 215 - -
Stsc241875g00001 294 ProSitePatterns GATA-type zinc finger domain. 221 246 IPR000679 GO:0006355|GO:0043565
Stsc241875g00001 294 Gene3D - 214 265 IPR013088 GO:0006355|GO:0008270
Stsc241875g00001 294 MobiDBLite consensus disorder prediction 67 91 - -
Stsc241875g00001 294 PANTHER GATA TRANSCRIPTION FACTOR 57 288 - -
Stsc241875g00001 294 MobiDBLite consensus disorder prediction 73 91 - -
Stsc241875g00001 294 CDD ZnF_GATA 220 267 IPR000679 GO:0006355|GO:0043565
Stsc241875g00001 294 ProSiteProfiles GATA-type zinc finger domain profile. 215 251 IPR000679 GO:0006355|GO:0043565
Stsc241875g00001 294 MobiDBLite consensus disorder prediction 192 213 - -
Stsc241875g00001 294 SMART GATA_3 215 265 IPR000679 GO:0006355|GO:0043565
Stsc241875g00001 294 MobiDBLite consensus disorder prediction 121 150 - -
Stsc241875g00001 294 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 278 - -
Stsc241875g00001 294 FunFam GATA transcription factor 210 294 - -
Stsc241875g00001 294 Pfam GATA zinc finger 221 254 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241875g00001 Stsc-Chr241875 6786 9797 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241875g00001 20 285 C2C2-Gata Transcription Factor Family AT1G08010 36.296 1.81e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc241875g00001 GATA 6.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241875g00001 - - gmx:100813303 287.73