Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241874g00013 ATGACTTTGAACAATTCTCATCAAAATCCTGCACCACTTGCAAAGTATGAGGAGGTTACCACAAATCCCAAGCTTTTCATGAGTACTCTAGAGAAGCTCCACGCTAATATGGGCACCAAGTTCATGATACCCATTATTGGAGGAAAAGAATTGGATTTGTTTCACCTCTTTATTCAAGTGACTTCTCGAGGAGGGATTGAGAAGGGTCAATCTCAATCAAGCATTCCGACTCCCATTCAAAAAGAACAATTTGAAACAAGATCTTCAACAGCAGTAATTGGAGTGATCGATGCAAAATTTGAAAGTGGATATCTAATTTCTGTTTCAATAGGTTCAGAGGTGCTGAAAGGTGTACTTTATCAGGATCCACATCCACATCCACAACGCCCTTCACTGCCTCCTGTTGCATCATTTCAAAGTGTTATGGCCAAGAACAACAACAATTCTAATTCTTTATTGGGTATCCAACGTCGTCGACGTAGGAAGAAATGCGAAATCAAAAGGAGGGATCCTTCTCATCCAAAACCTAACAGAAGTGGCTACAATTTCTTCTTTGCGGAGCAACATGCAAGACTAAAACAACTACACCAAGCCAAGGACAGAGACATTAGTAGGACCATTGGTGAACTCTGGAACAAGTTAAAAGACGACCCTGAAAAACTAGTATATCAAGAGAAGGCTCTACGAGACAAAGAAAGGTACAGAGAAGAAATGGAACATTACCGTCAGAAACTGAGAATGATAAGAAACAATAATAATTCTTTATTGCAACAAGGGTTTCCTCAAGTGGATAAAAATTTGACAGATGAAGGCTCTCTTCAAAGTCAAACCCCTGAAGAGGAGATCACTTCTGGTGGAAGCGAAAATGACAATGAAATTAACATGGATCCATTTAATTCTCAGCAACCTACATTTTTTACCTTAAAAAAACCATCCATAGCAGGAGATCATAATAACCTTGGACATCCAAGTATGGATCACCCAAAAAATATGTTGACAATGTTGTAG 1008 0.3899 MTLNNSHQNPAPLAKYEEVTTNPKLFMSTLEKLHANMGTKFMIPIIGGKELDLFHLFIQVTSRGGIEKGQSQSSIPTPIQKEQFETRSSTAVIGVIDAKFESGYLISVSIGSEVLKGVLYQDPHPHPQRPSLPPVASFQSVMAKNNNNSNSLLGIQRRRRRKKCEIKRRDPSHPKPNRSGYNFFFAEQHARLKQLHQAKDRDISRTIGELWNKLKDDPEKLVYQEKALRDKERYREEMEHYRQKLRMIRNNNNSLLQQGFPQVDKNLTDEGSLQSQTPEEEITSGGSENDNEINMDPFNSQQPTFFTLKKPSIAGDHNNLGHPSMDHPKNMLTML 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241874g00013 335 Pfam HMG (high mobility group) box 174 242 IPR009071 -
Stsc241874g00013 335 CDD HMG-box_AtHMGB9-like 174 241 - -
Stsc241874g00013 335 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 174 242 IPR009071 -
Stsc241874g00013 335 SUPERFAMILY HMG-box 162 246 IPR036910 -
Stsc241874g00013 335 Gene3D High mobility group box domain 156 254 IPR036910 -
Stsc241874g00013 335 SUPERFAMILY ARID-like 16 68 IPR036431 GO:0003677
Stsc241874g00013 335 Pfam ARID/BRIGHT DNA binding domain 24 83 IPR001606 GO:0003677
Stsc241874g00013 335 Gene3D - 12 89 IPR036431 GO:0003677
Stsc241874g00013 335 MobiDBLite consensus disorder prediction 265 297 - -
Stsc241874g00013 335 ProSiteProfiles ARID domain profile. 20 112 IPR001606 GO:0003677
Stsc241874g00013 335 SMART hmgende2 173 243 IPR009071 -
Stsc241874g00013 335 Coils Coil 224 258 - -
Stsc241874g00013 335 SMART ARID_2 17 101 - -
Stsc241874g00013 335 MobiDBLite consensus disorder prediction 158 181 - -
Stsc241874g00013 335 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 68 - -
Stsc241874g00013 335 SMART bright_3 21 106 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241874g00013 Stsc-Chr241874 62476 64115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241874g00013 11 68 ARID Transcription Factor Family AT1G04880 62.069 5.05e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc241874g00013 HMG_box 1.3e-12 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241874g00013 - - qsu:112029848 254.603