Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241873g00007 ATGGGAAGAGGTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGTCCATGGAGTCCTGAAGAAGATACAAAGCTCAAGGATTACATTCACAAACATGGAACACAAGGAAACTGGATTGCTCTTCCAAAAAAGGCTGGTTTGAAAAGATGTGGGAAAAGTTGTAGACTTAGATGGCTTAATTATCTTAGACCTGATATTAAGCATGGAGAGTATTCTGAAGATGAAGATAGAATCATATGCTATCTCTTTTCTACCATTGGAAGCAGATGGTCAATAATAGCCTCTCAGTTGCCAGGAAGGACAGACAATGACATCAAGAACTATTGGAACACCAAGCTTAAGAAAAAGATGATGATGATGATGCCATTAATAACTATGAACAATAATAACCCTCATCATCATCATCACCACCAAATTACCCTTTTCTCCATCCTTCAAAATTCATCATCAACACAACATCAACATTATTCTCCCTCATCTCCTCCACCATTATTATCATCATCTTTCATATCAAACACAAACACCACCAATAATAATGAAACTTATTACTACTACCACCCTCATGTTTCAAGTGATCTTATCAATAATGGCAATAATAATAGTTCTTCTACTTCTTCTGATTCTATCATCTTTCAAGACCAACAAGAATCTTCTTATATGGATAATAACACCATTATTCCTCAGAATTATCATCATCAAGAACAACTTGGATATTGTGGTGATGCTTATTATGATTATGGTACCTTTGTTGATGAACATATAGTTTCACATAATCATAATAATAATAATTATTACCACTATAGTGGGGTAGAAGATGCACAAAATTTTATTTATTCTAATGCTGGCATGGATAATAATGTGGGGATTGATGAGAAACAAAGTACTGAAAGTAGTACCTTGTTGGAAGAAAATCCATTGGATAATTACGGTGTAGATGAGACTAAAGAGCTACTGTTAGATAACTAG 966 0.3437 MGRGPCCDKANVKKGPWSPEEDTKLKDYIHKHGTQGNWIALPKKAGLKRCGKSCRLRWLNYLRPDIKHGEYSEDEDRIICYLFSTIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMMMMPLITMNNNNPHHHHHHQITLFSILQNSSSTQHQHYSPSSPPPLLSSSFISNTNTTNNNETYYYYHPHVSSDLINNGNNNSSSTSSDSIIFQDQQESSYMDNNTIIPQNYHHQEQLGYCGDAYYDYGTFVDEHIVSHNHNNNNYYHYSGVEDAQNFIYSNAGMDNNVGIDEKQSTESSTLLEENPLDNYGVDETKELLLDN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241873g00007 321 Gene3D - 70 138 - -
Stsc241873g00007 321 SMART sant 13 64 IPR001005 -
Stsc241873g00007 321 SMART sant 67 115 IPR001005 -
Stsc241873g00007 321 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc241873g00007 321 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc241873g00007 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Stsc241873g00007 321 CDD SANT 16 62 IPR001005 -
Stsc241873g00007 321 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc241873g00007 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Stsc241873g00007 321 PANTHER OS09G0431300 PROTEIN 1 263 - -
Stsc241873g00007 321 FunFam Transcription factor RAX3 7 68 - -
Stsc241873g00007 321 CDD SANT 70 113 IPR001005 -
Stsc241873g00007 321 Gene3D - 7 68 - -
Stsc241873g00007 321 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc241873g00007 321 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241873g00007 Stsc-Chr241873 49797 51030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241873g00007 1 118 MYB Transcription Factor Family AT5G57620 83.898 3.45e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc241873g00007 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241873g00007 K09422 - gmx:100820139 249.21