Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241873g00004 ATGTCACAACAAGATTCTGAGGAAGAGATAAAGACCATTGAACACTGGAAATGGTCTGAAATGCAAGGACTTGAGCTTGTTCCAGAAGCATCACAACCACCACCACCACCAAAAACAAGAGCAAGAGCAATGGAGGAAGAACAAAGAGGAGAACAATCCAAGGAGCAAGAAAAAATGGTGGACAAGGCCACTTCAGAACCTAATAGAGATGGTGGTGCTGCTACTACTAGTACGAGTGGTGGTGGTGGTGGAGGAGAAAAAGGTGCAAGTGTTGAACCTGTTGGGTTTGGTGAGCTTTTCAGATTTGCTGATTCATTGGATTACATCCTAATGGGAATTGGAACAATTGGAGCAATGGTACATGGATGTTCATTGCCACTGTTCTTAAGGTTCTTTGCTGATCTTGTGAACTCTTTTGGTTCCAATGCCAATAATGTGGACAAGATGACCCAGGAAGTTGTCAAGTATGCATTTTACTTCCTTGTTGTTGGTGCTGCTATATGGGCATCATCATGGGCAGGTGAGAGGCAATCAACAAGGATGAGGATCAAGTATCTTGAAGCTGCTTTAGAACAAGACATTCAATTCTTTGACACTGAGGTTAGAACCTCAGATGTTGTTTCTGCAATCAACACTGATGCTGTCATGGTCCAAGATGCCATTAGTGAGAAGTTGGGTAGTTTCATTCACTACTTTGGCACATTTATTTCTGGGTTTGCTGTGGGTTTCAGTGCTGTGTGGCAATTAGCACTGGTCACTCTTGCTGTAGTTCCTATGATTGCTGTCATTGGAGCCATTCACACAACCACTTTGGCCAAGCTCTCTGCTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGGAACATTGTTGAACAGACTGTTGTTCAAATCAGAGTGGTTTTGGCATTTGTTGGGGAGAATAGAGCACTGCAAGGTTACTCATCTGCATTGAGGATTGCTCAGAAGCTTGGATACAAAACTGGATTTGCAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGCTATGCTCTTTTGCTTTGGTATGGTGGATATCTTGTTAGGCATCACAACACCAATGGAGGATTAGCCATTGCAACCATGTTTGCTGTTTGTATTGGTGGATTGGCTTTAGCCCAGTCTGCACCAAGCATAGCTGCATTTACAAAGGCCAGAGTTGCGGCTGCGAAAATATACCGTGTGATCGATCACAAGCCGGCTATAGAGAGAAACAACGAATCCGGTGTGGAGTTAGATAGTGTGACAGGACTAGTGGAGCTGAAAAATACCATAGCCTTGGTGGGAAGCAGCGGCTCCGGAAAGAGCACCGTTGTGTCTCTCATAGAGAGATTCTATGACCCTTCATCAGGACAAGTTTTGTTAGATGGGAATGATGTTAAGATCTTGAAGCTAAAATGGTTGAGGCAGCAAATAGGACTAGTGAGCCAAGAACCGGCTTTGTTCGCGACAACGATTCGAGAAAACATACTCTTAGGAAGATCTGATGCTGACCAAGTTGAGATTGAAGAAGCTGCAAGGGTAGCCAATGCTCATTCTTTCATTATCAAACTTCCAGAAGGTTATGAAACACAGGTAGGTGAAAGGGGGTTGCAACTTTCAGGAGGGCAAAAGCAAAGAATTGCTATTGCAAGAGCAATGCTGAAGAACCCGGCAATTCTTCTCCTAGATGAGGCCACAAGTGCATTGGACTCTGAATCAGAAAAGCTTGTGCAAGAAGCACTTGATAGGTTCATGATTGGTAGAACTACACTTGTGATTGCACACCGCCTTTCCACGATCCGAAAAGCTGACCTTGTAGCAGTACTTCAGCAAGGAAGTGTATCAGAAATTGGAACTCATGATGAGCTTTTCGCTAAAGGCGAAAATGGAGTCTATGCCAAGCTTATCCGGATGCAAGAGGCTGCCCATGAAACTGCCATGAGTAATGCCAGAAAGAGTAGTGCAAGGCCTTCGAGTGCAAGAAACTCTGTAAGTTCACCCATTATTGCTCGGAATTCTTCTTACGGCCGGTCACCATACTCAAGAAGGCTATCTGACTTCTCCACATCGGATTTTAGTCTTTCCATTGATGCATCGCATCCGAATTACAAGCTCGAAAAGCTTGCCTTCAAAGAGCAAGCCAGTTCCTTTTGGAGACTTGCAAAGATGAACTCTCCTGAATGGCTCTATGCTTTAATTGGTTCTATAGGTTCTGTTGTTTGTGGATCACTTAGTGCTTTCTTTGCTTATGTTCTCAGTGCTGTCCTCAGTGTCTACTACAATCCGAACCACAGACACATGATCCGAGAAATAGAAAAGTACTGCTACTTATTAATAGGACTTTCATCAGCAGCTCTTATCTTCAATACATTGCAGCACTTCTTCTGGGACATTGTTGGGGAAAATCTCACGAAACGAGTTAGGGAGAAAATGTTCAGTGCAGTGCTCAAGAACGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCTAGAATTGCAGCAAGGCTATCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATAGAATTTCAGTAATTGTGCAGAACACTGCACTTATGTTGGTTGCTTGCACTGCAGGGTTTGTACTACAATGGCGCCTTGCCCTCGTCCTTGTAGCTGTCTTCCCAGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTTGAAGCTGCTCATGCCAAGGCCACACAACTTGCTGGGGAGGCTATAGCCAATGTAAGGACTGTTGCTGCCTTTAATTCGGAAAAGAAAATCGTAGGACTTTTCGTGTCAAACCTTGAAATTCCGCTGAGGCGCTGCTTTTGGAAGGGACAGATTTCTGGAAGTGGATATGGGATAGCACAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTTGTTAAGCACGGAATATCTGACTTCTCTAAAACAATCAGAGTGTTTATGGTCCTCATGGTCTCGGCTAATGGTGCTGCCGAAACTTTAACCCTGGCTCCTGACTTCATCAAGGGTGGTAGAGCCATGAGGTCAGTCTTTGAACTTCTAGACCGCAGAACTGAAATTGAGCCGGATGATCCTGATGCTACACCAGTTCCTGACCGTCTTCGTGGTGAAGTTGAGCTGAAGCATGTTGATTTCTCTTACCCTTCTAGGCCGGATATGCCGGTTTTTCGTGACCTGAGCCTTCGTGCAAGGGCAGGTAAAACTCTTGCTCTTGTAGGGCCTAGTGGCTGTGGTAAGAGCTCGGTTATTGCACTTATCCAGAGGTTCTATGATCCGTCGTCCGGCCGAGTCATGATTGATGGAAAGGACATAAGGAAATACAACCTTAAGTCCCTAAGAAGGCACATTGCTGTAGTGCCTCAGGAACCATGCTTGTTTGCTACTACAATCTATGAAAACATTGCTTATGGCCATGACTCGGCTACTGAAGCCGAGATCATCGAGGCTGCTACTCTTGCGAATGCACACAAGTTCATATCTGGTCTGCCTGAAGGATACAAAACATATGTTGGGGAGAGAGGAGTTCAACTGTCAGGAGGACAAAAGCAAAGAATAGCCATTGCTAGAGCTTTTGTGAGGAAACCTGAGCTGATGCTTCTCGACGAAGCAACAAGTGCGCTCGATGCAGAATCGGAGAGGTCAGTGCAGGAGGCTCTAGACCGAGCTTGCACCGGAAAAACAACTATCATAGTCGCCCACAGACTATCCACAATCAGGAATGCCAATCTCATTGCTGTGATTGATGATGGGAAAGTAGCAGAACAAGGATCACACTCACAGTTGTTGAAGAACTACCCTGATGGGATCTATGCAAGAATGATTCAATTGCAAAGATTCTCAAACAACCAAGTCATTGGTGTTGCCTCAAGTTCAAGCTCCTCAACAAGACCAAACGATGATCAAAGGGAAAGCTAG 3972 0.4481 MSQQDSEEEIKTIEHWKWSEMQGLELVPEASQPPPPPKTRARAMEEEQRGEQSKEQEKMVDKATSEPNRDGGAATTSTSGGGGGGEKGASVEPVGFGELFRFADSLDYILMGIGTIGAMVHGCSLPLFLRFFADLVNSFGSNANNVDKMTQEVVKYAFYFLVVGAAIWASSWAGERQSTRMRIKYLEAALEQDIQFFDTEVRTSDVVSAINTDAVMVQDAISEKLGSFIHYFGTFISGFAVGFSAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSAKSQEALSQAGNIVEQTVVQIRVVLAFVGENRALQGYSSALRIAQKLGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHNTNGGLAIATMFAVCIGGLALAQSAPSIAAFTKARVAAAKIYRVIDHKPAIERNNESGVELDSVTGLVELKNTIALVGSSGSGKSTVVSLIERFYDPSSGQVLLDGNDVKILKLKWLRQQIGLVSQEPALFATTIRENILLGRSDADQVEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEAAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSIDASHPNYKLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHRHMIREIEKYCYLLIGLSSAALIFNTLQHFFWDIVGENLTKRVREKMFSAVLKNEMAWFDQEENESARIAARLSLDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEKKIVGLFVSNLEIPLRRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDPDATPVPDRLRGEVELKHVDFSYPSRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPSSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISGLPEGYKTYVGERGVQLSGGQKQRIAIARAFVRKPELMLLDEATSALDAESERSVQEALDRACTGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNYPDGIYARMIQLQRFSNNQVIGVASSSSSSTRPNDDQRES 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241873g00004 1323 FunFam ABC transporter B family member 1 98 425 - -
Stsc241873g00004 1323 Pfam ABC transporter transmembrane region 735 1004 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241873g00004 1323 Pfam ABC transporter transmembrane region 112 376 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241873g00004 1323 Gene3D - 1048 1304 IPR027417 -
Stsc241873g00004 1323 CDD ABC_6TM_Pgp_ABCB1_D1_like 111 400 - -
Stsc241873g00004 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 641 IPR027417 -
Stsc241873g00004 1323 Gene3D ABC transporter type 1, transmembrane domain 708 1044 IPR036640 GO:0005524|GO:0016020
Stsc241873g00004 1323 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1057 1293 IPR003439 GO:0005524
Stsc241873g00004 1323 SMART AAA_5 1084 1276 IPR003593 GO:0016887
Stsc241873g00004 1323 SMART AAA_5 429 615 IPR003593 GO:0016887
Stsc241873g00004 1323 Gene3D - 406 655 IPR027417 -
Stsc241873g00004 1323 MobiDBLite consensus disorder prediction 40 65 - -
Stsc241873g00004 1323 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 392 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241873g00004 1323 MobiDBLite consensus disorder prediction 1 88 - -
Stsc241873g00004 1323 FunFam ABC transporter B family member 1 713 1022 - -
Stsc241873g00004 1323 ProSitePatterns ABC transporters family signature. 1196 1210 IPR017871 GO:0005524|GO:0016887
Stsc241873g00004 1323 PANTHER ABC TRANSPORTER B FAMILY 709 1298 IPR039421 -
Stsc241873g00004 1323 CDD ABC_6TM_Pgp_ABCB1_D2_like 723 1039 - -
Stsc241873g00004 1323 SUPERFAMILY ABC transporter transmembrane region 99 411 IPR036640 GO:0005524|GO:0016020
Stsc241873g00004 1323 SUPERFAMILY ABC transporter transmembrane region 721 1044 IPR036640 GO:0005524|GO:0016020
Stsc241873g00004 1323 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 734 1021 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241873g00004 1323 Pfam ABC transporter 421 569 IPR003439 GO:0005524
Stsc241873g00004 1323 MobiDBLite consensus disorder prediction 69 83 - -
Stsc241873g00004 1323 FunFam ABC transporter B family member 1 1047 1297 - -
Stsc241873g00004 1323 FunFam ABC transporter B family member 19 1023 1045 - -
Stsc241873g00004 1323 ProSitePatterns ABC transporters family signature. 541 555 IPR017871 GO:0005524|GO:0016887
Stsc241873g00004 1323 Gene3D ABC transporter type 1, transmembrane domain 85 405 IPR036640 GO:0005524|GO:0016020
Stsc241873g00004 1323 CDD ABC_MTABC3_MDL1_MDL2 432 641 - -
Stsc241873g00004 1323 FunFam ABC transporter B family member 1 413 642 - -
Stsc241873g00004 1323 CDD ABC_MTABC3_MDL1_MDL2 1057 1296 - -
Stsc241873g00004 1323 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 401 638 IPR003439 GO:0005524
Stsc241873g00004 1323 Pfam ABC transporter 1076 1224 IPR003439 GO:0005524
Stsc241873g00004 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1048 1296 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241873g00004 Stsc-Chr241873 24369 30751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241873g00004 87 1318 Calmodulin-binding Proteins AT2G36910 86.493 0.0 2207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241873g00004 K05658 - gmx:100814667 2208.33