LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241872g00006	GGAAGGCACTGCATTTGGCCCCTGCGCTGCTCGTCCGTGAAGAAGCCGCATCTCTCCGTCGTCCGTGCTGGAAGCCCATCCCCGCCGTCGCTGCGCCTCCGCCTCGCCGTGTCTCCGCCGTTCAGCTGCAGGGGACGTCTTCTGCGTGACCACCGGCCTTCGTCGACGGAGCTGCTGCTGTCACCGTCGCGAGTCCCGGCCGCCACCTTCGCCAAGACGCCATTGCCATCAACACCGAACCAGGATGCTATATTTCGAATAGTAGCTGTAGTGCTACACTTGGGAAATATTGAATTTGTTAGGGGGGACGATGAAGAGACTGATTCCTCTAAACCTAAGGATGACAAATCTCGTTTCCACCTTAAAACTGTAGCTGAGCTTTTGATGATTGTGGACAAGATTAACAATTCTATTGGGCAGGATCCAAATTCAAAGAACTTAATTGGAGTCTTAGATATATACGGATTTGAAAGTTTCAAGACCAACAGTTTTGAGCAATTCTGTATCAATTTGACTAATGAGAAATTGCAACAGCATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAAGAATATACAAAGGAAGAAATCAATTGGAGTTATATAGAGTTTGTTGATAATCAAGATGTTCTTGACCTCATAGAAAAGAAACCAGGTGGCGTTATTGCTCTTCTAGATGAGGCATGCATGCTTCCAAGATCAACACATGAAACATTTGCTGAAAAGCTATATCAAACATTTAAAGACAATAAAAGGTTCAGCAAGCCAAAGGTGTCTCGTACGGATTTCACAATAAACCACTATGCTGGTGATGTAAGTGAAAAGAAGTAG	831	0.4537	GRHCIWPLRCSSVKKPHLSVVRAGSPSPPSLRLRLAVSPPFSCRGRLLRDHRPSSTELLLSPSRVPAATFAKTPLPSTPNQDAIFRIVAVVLHLGNIEFVRGDDEETDSSKPKDDKSRFHLKTVAELLMIVDKINNSIGQDPNSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMLPRSTHETFAEKLYQTFKDNKRFSKPKVSRTDFTINHYAGDVSEKK	276

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241872g00006	276	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	78	272	IPR027417	-
	Stsc241872g00006	276	ProSiteProfiles	Myosin motor domain profile.	1	276	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Stsc241872g00006	276	SMART	MYSc_2a	9	276	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Stsc241872g00006	276	Pfam	Myosin head (motor domain)	129	273	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Stsc241872g00006	276	PANTHER	MYOSIN	80	130	-	-
	Stsc241872g00006	276	Gene3D	-	159	273	-	-
	Stsc241872g00006	276	PRINTS	Myosin heavy chain signature	200	228	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Stsc241872g00006	276	PRINTS	Myosin heavy chain signature	147	175	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Stsc241872g00006	276	Gene3D	Myosin VI head, motor domain, U50 subdomain	77	140	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241872g00006	Stsc-Chr241872	62842	65289	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241872g00006	77	273	Myosins gene family	AT1G04600	64.634	2.57e-103	328

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241872g00006	K10357		-	gmx:100791031	343.584