Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241872g00001 ATGGATGAGGAGAAGATGACATCTTTCAAAAAAGCTATTGAAGACATGGCTGCTGAGAGTTTACGTTGTGTTGCCATTGCATATAGAACATTTGAAAAGGAGAATGTTCCAGCCAATGAAGAACAACGAGCTCACTGGTCTTTACCAGAAGATAATCTTGTTTTGTTAGCTATTGTTGGTCTGAAGGATCCTTGTCGACCTGGAGTGAAAGATTCAGTGGAGCTTTGCCAAAAAGCAGGGGTTAAGGTAAAAATGGTCACCGGTGACAATGTCAAAACTGCCAAAGCAATTGCTGTGGAGTGTGGAATACTTAATTCCCTTGCTGAAGCTACAGAGCCTACCATCATTGAAGGGAAAACTTTTCGTGCCTTGACAGATGCACAGAGAGATGAAATTGCTGAAGCAATATCAGTTATGGGACGGTCATCTCCTAATGACAAGTTATTGCTCGTGCAAGCATTAAGGAGGAAGGGACATGTTGTGGCTGTAACTGGGGATGGAACTAATGATGCTCCTGCACTACATGAGGCTGATATAGGTCTTGCAATGGGTATTCAAGGAACAGAAGTTGCAAAAGAGAGCTCTGATATTATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTGAGATGGGGACGTTCTGTGTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTCACAGTAAATGTAGCCGCTCTTGTTATAAATGTTGTTGCTGCTGTTTCCTCTGGTGATGTCCCACTAAACGCAGTGCAGCTTTTGTGGGTAAATCTTATTATGGATACTTTGGGAGCACTAGCATTGGCAACTGAACCACCAACTGATCACCTTATGGATCGGACTCCTGTGGGCCGAAGAGAACCCCTCATAACAAATATTATGTGGAGAAATTTGCTGATACAGGCAATGTACCAAGTGTCTGTGTTGCTTGTTCTGAATTTCCGAGGTAGGAGCATACTGGGTCTGACACATGACAAAAATGACCATGCAATTAAAGTGAAAAACACTCTGATCTTCAATGCATTTGTTCTGTCTCAAATCTTTAATGAATTCAATGCGCGAAAGCCAGATGAGTTCAACATATTCAGTGGAGTCACGAAAAACTACCTCTTCATGGGTATAGTGGGACTAACTGTTGTGCTTCAGATCATCATCATTGAATTCCTCGGCAAGTTCACTTCAACAGTCAGGCTTAATTGGAAGCAGTGGCTCATCTCTGTTATCATTGGATTCATAAGTTGGCCTCTTGCTGTGGTTGGGAAATTGATACCAGTTCCAGATACTCCCATCAACGGCGTATTTTCAAGATTTCGCGGTCGAAGAAGGAAGGAACCTGAGGCCTCACAATAG 1359 0.4216 MDEEKMTSFKKAIEDMAAESLRCVAIAYRTFEKENVPANEEQRAHWSLPEDNLVLLAIVGLKDPCRPGVKDSVELCQKAGVKVKMVTGDNVKTAKAIAVECGILNSLAEATEPTIIEGKTFRALTDAQRDEIAEAISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLTHDKNDHAIKVKNTLIFNAFVLSQIFNEFNARKPDEFNIFSGVTKNYLFMGIVGLTVVLQIIIIEFLGKFTSTVRLNWKQWLISVIIGFISWPLAVVGKLIPVPDTPINGVFSRFRGRRRKEPEASQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241872g00001 452 NCBIfam HAD-IC family P-type ATPase 131 244 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241872g00001 452 PRINTS P-type cation-transporting ATPase superfamily signature 164 183 - -
Stsc241872g00001 452 PRINTS P-type cation-transporting ATPase superfamily signature 188 200 - -
Stsc241872g00001 452 PRINTS P-type cation-transporting ATPase superfamily signature 57 68 - -
Stsc241872g00001 452 PRINTS P-type cation-transporting ATPase superfamily signature 79 89 - -
Stsc241872g00001 452 FunFam Calcium-transporting ATPase 58 209 - -
Stsc241872g00001 452 Pfam Cation transporting ATPase, C-terminus 249 426 IPR006068 -
Stsc241872g00001 452 SUPERFAMILY HAD-like 9 269 IPR036412 -
Stsc241872g00001 452 Gene3D - 65 209 IPR023214 -
Stsc241872g00001 452 Gene3D - 1 64 IPR023299 GO:0000166
Stsc241872g00001 452 NCBIfam calcium-translocating P-type ATPase, PMCA-type 4 428 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc241872g00001 452 Gene3D - 210 417 - -
Stsc241872g00001 452 SUPERFAMILY Calcium ATPase, transmembrane domain M 12 428 IPR023298 -
Stsc241872g00001 452 PANTHER CATION TRANSPORTING ATPASE 1 428 - -
Stsc241872g00001 452 FunFam Calcium-transporting ATPase 181 430 - -
Stsc241872g00001 452 Pfam haloacid dehalogenase-like hydrolase 52 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241872g00001 Stsc-Chr241872 12497 17569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241872g00001 1 445 Primary Pumps ATPases AT5G57110 77.629 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241872g00001 K01537 - gmx:100792945 796.578