Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241871g00008 ATGGGTAAAAAAATTGTTAAAAAGTGTAAAGGTTTACCTTTGGCTGTGAAGACTCTTGGAGGTTTATTGCGTCATAAGTATAATGTAAGGGATTGGGGGAATATACTTAAAAGTAAAATTTGGGAACTTCGGGAAGATGAGAGTATGATTGTTCCTGCATTAAGAGTTAGTTATCACTATCTTCCTTCACATTTAAAGCGATGCTTTGTTTATTGCTCATTATATCCTAAGGATTATCATTTTGACAAAAACGAATTAATCTTATTGTGGATGGCCGAGGATTTCATACAACCAATAGAAAATTACACATTAGAAGATATTGGTTGTGCATATTTTGATGAATTATTTGCAATGTCATTTTTCCAACCTTCTAGTAAAGATGTTGACTTATTTGTAATGCATGATCTCAGACATGATTTAGCAACATTTTTTGCTGGAGAGTTCTATTTCAGAATAAAAGAATTTGAAAACCAACAAAAGATTTGCAACAAAACTCGTCATTTGTCATATATGGTAAATCCTAATGATTCAAGCTTGATACTTGGAGAGGCCTGTAAGAGAGCAATACATATGAGAACATTTCTGGATGTTCATTTGGTTCATCGTTATGAATCAATTAAAATCGAAGGATGCTCTTCTTGGCTCTTAGAATTAGATTTGAGGTGTTTAAGAGTTTTGTCATTTAAATATTTTTCTATTGAGTTATTGCCCGACTCAATAGAAAAATTGATCCATTTGCATTATGTAGATCTTTCTTTCACACCTATTGTGGAATTGTCAGAATCATTGTGTAAATTGTACAATCTCCAAACCTTGAAATTGAGTTATTGTTATAAGCTAGAGATGCTTCCAAGCCGCATGCAGGATCTTTTGAACCTGCGCCACCTTGATATCAGAGGAACTGATAATTTGAAAGAGATGCCAAAGGGAATGAGCAAGTTACAACGTTTGAATTTATTAGGACACTATGTTGTTGGAAAGCATGAAGAGAATGGAATAGGAGAATTGGGACCAATTGATGTTCATGGCGCATTTCGCATTTCCAACTTAGAGAATGTCAACAACAGTGGTGAAGCTTTGGAAGCAAGCATGGGAAACAAAAAGCACATCACCATTTTAGAATTGAAATGGCTTCCGGATGGTGATCTTGTTGATCTTCAAACCGAAAGAGATATACTTGCCAAGTTCCGACCTCATTGA 1200 0.3467 MGKKIVKKCKGLPLAVKTLGGLLRHKYNVRDWGNILKSKIWELREDESMIVPALRVSYHYLPSHLKRCFVYCSLYPKDYHFDKNELILLWMAEDFIQPIENYTLEDIGCAYFDELFAMSFFQPSSKDVDLFVMHDLRHDLATFFAGEFYFRIKEFENQQKICNKTRHLSYMVNPNDSSLILGEACKRAIHMRTFLDVHLVHRYESIKIEGCSSWLLELDLRCLRVLSFKYFSIELLPDSIEKLIHLHYVDLSFTPIVELSESLCKLYNLQTLKLSYCYKLEMLPSRMQDLLNLRHLDIRGTDNLKEMPKGMSKLQRLNLLGHYVVGKHEENGIGELGPIDVHGAFRISNLENVNNSGEALEASMGNKKHITILELKWLPDGDLVDLQTERDILAKFRPH 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241871g00008 399 FunFam Probable disease resistance protein At1g63360 58 143 - -
Stsc241871g00008 399 Gene3D Ribonuclease Inhibitor 190 387 IPR032675 -
Stsc241871g00008 399 SUPERFAMILY L domain-like 132 376 - -
Stsc241871g00008 399 Pfam NB-ARC domain 1 37 IPR002182 GO:0043531
Stsc241871g00008 399 Gene3D - 1 56 IPR042197 -
Stsc241871g00008 399 PRINTS Disease resistance protein signature 9 23 - -
Stsc241871g00008 399 PRINTS Disease resistance protein signature 264 280 - -
Stsc241871g00008 399 PANTHER DISEASE RESISTANCE PROTEIN RP 2 383 IPR044974 GO:0006952
Stsc241871g00008 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 72 IPR027417 -
Stsc241871g00008 399 Gene3D - 57 142 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241871g00008 Stsc-Chr241871 41778 42977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241871g00008 233 320 WRKY Transcription Factor Family AT4G12020 38.202 1.82e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241871g00008 - - aip:107628003 557.755