Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241871g00005 ATGACTTCATCTTCATCTTCGTCTTCGTCTTCATCTCAGATAAAATACGACGTCTTCATCAGTTTTAGAGGTTTAGACACCCGTCACGGTTTCCTCAGCCATTTGCTTAAGGCATTAAGGGAGAAACAAATTGATGCATATGTGGATGACAAGCTTAAAGAAGGAATTGAGTTATTGCCTGCGCTTTTTACAGCAATTGAGGAATCACAGATTGCGTTGGTTATATTCTCCAAAGATTATGCCTCTTCAAAGTGGTGTTTAGAGGAGCTTGTCAAAATAACAGAATGCATGGCGAAAAATTGGCAAATTGTGATACCTATCTTCTACAATGTAGATCCATCGGATGTACGAAATCAAAAGGGGTGCTACAAAAGTGCATTTGTTGATCATGAAAAATCTTTCAAAGGCAACATCATGAATGTACAAAACTGGAAACTTGCCTTAAAAAGAGTTGCCAATTTATCAGGATTTCATTCCACAATTTTTGGGACTGAAGCTGAACTTATTGAGAGAGTTGTACAACGTGTGTTAACGAGGTTGAATTACATACCCCAAATTGAGTTAAAAGGTCTTATTGGAATGGATAAACCAATTGCAGAGCTTCAATCATTGATCTCTTGCAATGCAGGAAAAGATGTTCATATCATAGGAATTTGGGGTATGGGTGGCATTGGTAAGACAACTATAGCCAGTGTGTTATTTAATATATTGTGCTCTGAATTCGAAGGTTGTTGTTTTCTACCAAATGTCAGAGAACAATCAGAGAAGAATGGGATAACCCAACTAAGGGATAGACTTCTTTCCATATTGTTAGAGGAAAAAGATCTAAACATTGGTGCTAATGGAGTACCAACTCATGTTTTGAGAAGGCTCGGTCGCAAGAAGATTCTTGTTGTTCTCGACGATGTTAATAATCCAGATCATGTTCAGGACTTGGTTGGAGGACATGAATGGTTTGGTCGAGGTAGCAGAATCGTCGTCACAACTCGAGACAAGCATGTCATTTGTAAAGAAGCTGATGATATTTACCAAGTCGGGGTTTTAGAACACCATGAAGCTTTGCAACTTCTAAATTTGCACGCCTTTAACGGAAGCAGCCTTGAGCTGAATAATCAGCATAATGATCTTATGACAAGAGTAGTTGATTATGCCAAGGGAATCCCATTAGCTTTGAAGGTGTTGGGGACTTTTCTTTATGGTAAAAGTGATGAAGAATGGGAAAGTCAGTTGCAAAAGCTTCGGAAAATGTCATTCAAAGAAATTCAGAATGTTTTGAGATTGAGTTATGAGGGACTAGACCGAGAAGAAAGCAACATATTTTTATATATTGCATGTTTTTTCGAAGGGCATGATAACATTAAGATTTTGCTAGATGCTTGTGGTTACTCAACAGCTATTGCTTTGAAAACTCTTCATGATAGAGCTCTCATAATTGTTTCAAAAGATGGAAAGCATGTAACCATGCATGATTTGATTCGAGAAATGGGTCGAGAAATTGTTCGTGCACAAAACATTGAGAAGTTTGGGGAACGAAGTCATTTATGGGATGCTACAGAGATAACTCAAGTACTAAAGCAGGACCAGGGAACTAATCGAATTGAAAGCATAACGTTCAACATGTCAAGTGCTCCTGATCTGAGTTTAAGTCGTCATTCCCTTTCTAAAATGAAGAATCTAAACTTTCTGAGATTCTATTCACATGATACATATGGGGTAAACCTTCCAGAAGGCCTTGAAAATTTGCCAGATAAATTAAAACTTTTTCACTGGGATGATTACCCTTTGCAATCCTTGCCCACCAAATTCAATGCAGAGAATCTTGTTGAACTTGATATGCAAGGAAGTTACGTCAAAAAACTTTGGAAAAACGTACAGAACTTAGCAAATCTAAGACGCGTTGATCTTGATGGATCCAAGGAATTGATAGAACTTCCAGACCTCTCTAAAGCCTCAAATCTTGAAACATTATCACTCTGTGACTGCGAAAATTTGCGCTCTGTTCATCCATCCATTTTCTTCCTCCAAAAACTAATTTATGTGGACTTACAGGGTTGTATAAGATTGAAGAAACTCCCAGCTTCCACATCACTTATAGACTCAGTGGAAAAATTAGATGAAAAAGAATAG 2127 0.3771 MTSSSSSSSSSSQIKYDVFISFRGLDTRHGFLSHLLKALREKQIDAYVDDKLKEGIELLPALFTAIEESQIALVIFSKDYASSKWCLEELVKITECMAKNWQIVIPIFYNVDPSDVRNQKGCYKSAFVDHEKSFKGNIMNVQNWKLALKRVANLSGFHSTIFGTEAELIERVVQRVLTRLNYIPQIELKGLIGMDKPIAELQSLISCNAGKDVHIIGIWGMGGIGKTTIASVLFNILCSEFEGCCFLPNVREQSEKNGITQLRDRLLSILLEEKDLNIGANGVPTHVLRRLGRKKILVVLDDVNNPDHVQDLVGGHEWFGRGSRIVVTTRDKHVICKEADDIYQVGVLEHHEALQLLNLHAFNGSSLELNNQHNDLMTRVVDYAKGIPLALKVLGTFLYGKSDEEWESQLQKLRKMSFKEIQNVLRLSYEGLDREESNIFLYIACFFEGHDNIKILLDACGYSTAIALKTLHDRALIIVSKDGKHVTMHDLIREMGREIVRAQNIEKFGERSHLWDATEITQVLKQDQGTNRIESITFNMSSAPDLSLSRHSLSKMKNLNFLRFYSHDTYGVNLPEGLENLPDKLKLFHWDDYPLQSLPTKFNAENLVELDMQGSYVKKLWKNVQNLANLRRVDLDGSKELIELPDLSKASNLETLSLCDCENLRSVHPSIFFLQKLIYVDLQGCIRLKKLPASTSLIDSVEKLDEKE 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241871g00005 708 Gene3D - 9 180 IPR035897 -
Stsc241871g00005 708 Gene3D - 347 433 IPR042197 -
Stsc241871g00005 708 PRINTS Disease resistance protein signature 290 304 - -
Stsc241871g00005 708 PRINTS Disease resistance protein signature 625 641 - -
Stsc241871g00005 708 PRINTS Disease resistance protein signature 215 230 - -
Stsc241871g00005 708 PRINTS Disease resistance protein signature 384 398 - -
Stsc241871g00005 708 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 182 - -
Stsc241871g00005 708 SMART till_3 15 154 IPR000157 GO:0007165
Stsc241871g00005 708 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 696 IPR044974 GO:0006952
Stsc241871g00005 708 Gene3D - 181 344 IPR027417 -
Stsc241871g00005 708 Gene3D Ribonuclease Inhibitor 493 707 IPR032675 -
Stsc241871g00005 708 SUPERFAMILY L domain-like 488 702 - -
Stsc241871g00005 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 443 IPR027417 -
Stsc241871g00005 708 ProSiteProfiles TIR domain profile. 14 180 IPR000157 GO:0007165
Stsc241871g00005 708 Pfam NB-ARC domain 204 428 IPR002182 GO:0043531
Stsc241871g00005 708 Pfam TIR domain 15 185 IPR000157 GO:0007165
Stsc241871g00005 708 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 157 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241871g00005 Stsc-Chr241871 30949 39741 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241871g00005 11 705 WRKY Transcription Factor Family AT4G12020 34.502 1.49e-102 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241871g00005 - - ahf:112730190 1214.13