Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241870g00008 ATGGATGAAAAATTTGAAACTGCTGACAAAAAGGTGCTGGTTGATATTGTTAAATTGGCACAAAAGAGAGGACTGAAAGGTGAATTTGGAGACTGGAAAGAATTCTTGAACAGTCATGATAAAAAGTTTGGGGCAGGATTGAGTGACCCATCAAAGAGGTCCCATGAGGTCTTGGCCGCATTCCTGAAAACATTTTCAAAGGAGGATGATTTGAAGTATTTACTGGAGCAATTGAAAGATAGTTCACATGTTTCTCCCTATCAGAGTCTAGTCCAAATAACTCTTCGGCACCCGTTATATCCATTGGATTATTCATTTCCATCAGTTGATGAGGGATGGATAATTTTAAACCTTAAGAAAAAAAAGGTAATGAAGTCAACTCAAATATTTGCTGTTGATTGTGAAATGGTTCTCTGTGAAGATGGGACTGAAGCAGTAGTAAAAGTATGCGTGGTAGACCATAATTTAGAGGTCAAGCTAAATGAACTTGTAAAACCTGGGAAAGCAATTGCAGACTATAGAACAGAGATTACTGGTATTTCTTCTCAAGATCTCGAGGCAGTCACATGCTCCTTACCTGATATACAGAAATCAATGAAGAAGTTGTTAGAAAATGGAGCCATATTAGTGGGACACAGTTTGCATAATGATCTCCGTGTGCTGAAGATAGATCATGTTAGAGTGGTTGACACTGCGTATATCTTCCAATCCTCAGATGGATCAATTCACAAGAGACCTTCTTTAAATAATTTGTGCAAGACTGTGTTAGGTTATGAAGTTCGGAAAGATGGAGCTCTGCATAATTGTCTAGACGATGCACGTGCAGCAATGGAACTTTTACTTGCAAGGGTTAAGAATGGCGTTGATAAAGATTTTCCCGTTCAACTTCAAGAGCCAATAAGCTTACATATAGGACGTCGTTTGGACCACCAATCTTGGCGAGGTTAA 948 0.3882 MDEKFETADKKVLVDIVKLAQKRGLKGEFGDWKEFLNSHDKKFGAGLSDPSKRSHEVLAAFLKTFSKEDDLKYLLEQLKDSSHVSPYQSLVQITLRHPLYPLDYSFPSVDEGWIILNLKKKKVMKSTQIFAVDCEMVLCEDGTEAVVKVCVVDHNLEVKLNELVKPGKAIADYRTEITGISSQDLEAVTCSLPDIQKSMKKLLENGAILVGHSLHNDLRVLKIDHVRVVDTAYIFQSSDGSIHKRPSLNNLCKTVLGYEVRKDGALHNCLDDARAAMELLLARVKNGVDKDFPVQLQEPISLHIGRRLDHQSWRG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241870g00008 315 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 23 294 IPR047021 GO:0004527
Stsc241870g00008 315 SMART exoiiiendus 128 289 IPR013520 -
Stsc241870g00008 315 Gene3D - 124 296 IPR036397 GO:0003676
Stsc241870g00008 315 Pfam Exonuclease 131 280 IPR013520 -
Stsc241870g00008 315 CDD REX1_like 130 281 IPR034922 -
Stsc241870g00008 315 FunFam Small RNA degrading nuclease 3 124 298 - -
Stsc241870g00008 315 SUPERFAMILY Ribonuclease H-like 129 285 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241870g00008 Stsc-Chr241870 50006 56982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241870g00008 73 279 C2H2 Transcription Factor Family AT2G48100 29.680 2.41e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241870g00008 K14570 - gmx:100785565 485.337