Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241869g00007 ATGTCTAAGACATCCAGTGTCCCCCCTGCCTTCCAATCTATCAAGTCATTGCCTCCTAGCTTCAAGGTTGCCAATAATCTGAATGGTGGTCTTTCAACCAAGCATGGAGATGTTAGATTGAAGAGCGGTGATCCAATTCGATCAAGTAGTCCTGCAAATGGTGCACTAGTGGTGGAGGTTTCTAAGGAAGTTCATGACCGTGCTGGCAACATGGATGTTTTCGATGAGGATTCACCTTATAGTGGACAGGTTAGGTTGTTAGAAGAAGAAGACAGGCCATCAAATGGTGGTGAAGACTCAGAATCTGTCCCTTTGCCCCTCCCGTCAAATTCTGCATCCTCTAGAGAAAGCAGGTGGTGTGATACAACTCCTTATGCTTCAAAGAAGAAGGTTCAGTGTTGGCTTCAACTTTCAAATGGGAATTGGGAGCTGGTGAAGATAATAACATCTTCTGGATCTGAGTCTGTTGTTTCACTGCCTGATGGGAAAGTTTTAAAGGTGCACGATGAAAGCTTAGTATCAGCAAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAATGAACCTTCAGTCTTATACAACTTACAATATAGATACAACCAGAATATGATCTATACAAAAGCAGGGCCTGTTTTGGTTGCCATAAATCCCTTCAAGAAAGTTCCTCTGTATAGTAATGACTATATTGAAGCCTACAAGAGAAAATCAATTGAAAGCCCTCATGTATATGCCATTACTGACACTGCCATCCGGGAAATGATACGGGATGAAGTAAATCAATCTATAATTATAAGTGGTGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAGATAGCAATGCAATACTTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGGTAAGCTCATTGAAATTCACTTCAGTGAAACTGGAAAAATATGTGGTGCTAATATCCAAACATTCTAGAGTTGTCCAATGCAATGAAGGGGAAAGGTCCTATCATATATTTTATCAGCTATGTGCTGGGGCGCCACCATCTCTAAGGGATAAGCTAAATCTAAGAAGTGCTGAAGACTACAAATATCTTAGGCAGAGCAGTTGTTACTCAATTGTTGGTGTTAATGATGCGGAAGAATTTCGCACAGTCATGGAAGCACTCGATGTTGTCCATATTAGCAAAGAAGACCAGGAGAGTGTGTTTGCAATGCTTGCTGCTGTGTTATGGTTAGGAAATGTATCGTTTACAGTGATTGATAATGAAAATCATGTTCAAGCTGTTGAAGATGAGGGACTGTCGAGCGTTGCCAAGTTGATTGGCTGTGACATTGAAGATCTCAAGTTGACATTAACAACTCGCAAAATGAAAGTTGGCAATGATAATATTGTCCAAAAGTTGAAACTTTCACAGGCTATTGATGCGAGAGATGCTTTGGCAAAGTCAATATATTCCTGTTTGTTTGATTGGCTAGTTGAACAAATAAACAAATCACTTGCTGTTGGCAAAAGGCGCACAGGCAGATCAATCAGTATTCTAGATATCTATGGCTTTGAATCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCTAACGAGAGATTGCAGCAGCACTTCAATCGTCATTTGTTTAAGTTAGAACAAGAGGAATATATACAAGATGGGATTGATTGGGCTAAAGTTGAATTTGAAGATAACCAAGATTGCCTTAATCTTTTTGAAAAGAAACCATTGGGCTTACTATCCCTGTTGGATGAAGAGTCAACATTCCCAAATGGCACAGATTTAACATTTGCCAACAAGCTTAAGCAACATTTGAATTCTAATTCTTGCTTCAAAGGAGAACGAGACAAGGCCTTTACTGTTTGCCATTATGCAGGGGAGGTCATTTATGATACAACTGGATTCCTAGAGAAGAACAGAGACCTATTACACTTGGATTCCATCCAACTTCTCTCCTCAAGCACATGTCATCTTCCTCAGAAATTTGCAACCCAAATGCTTACTCAGACTGAGAAGCCTGCAGTTGGTCCCTTACACAAGTCAGGTGGAGCAGACTCCCAAAAGCTAAGTGTTGCCACAAAATTCAAGGGACAATTATTCCAACTGATGCAACGTTTAGAGAGCACTACACCACATTTTATTCGCTGCATTAAACCCAATAACCTCCAATCACCCGGATTATATGAGCAAGGCCTTGTACTGCAGCAGCTGAGATGTTGTGGAGTCCTGGAAGTAGTTCGAATATCGAGATCAGGCTTTCCCACTAGAATGTCCCACCAAAAGTTTGCCAGAAGATATGGTTTTCTTCTCCTTGAAAATGTTGCATCTCAAGATCCACTTAGCGTTTCGGTTGCAATTCTTCATCAGTTCAACATTTTGCCAGAGATGTACCAAGTTGGTTACACAAAACTCTTTTTCAGAACAGGACAGGTTGGAGTGCTTGAAGATACTAGAAATCGTACACTTCATGGAATTTTGCGTGTGCAAAGTTGCTTCAGGGGTTACCAAGCTCGTTCTTACCGCAAAAATCTTTGGAGATCAATCACTACTCTTCAATCATTTATTAGGGGAGATAAAATCAGAAAGGAATATGCAGTTTCACTGCGGAGACATAGAGCTGCTGTGGTTATACAAAAGAAGGCGAAAACAATATTGGCAAGAAACAGATTGAAGACTACCATTGATGCTGCAGTTGTCATACAATCATTTATCCGTGGTTGGTTAGTCAGAAGATGCTCAGGGGATCTAGGTTTACTGAAATCTGGAGGCACAAAGACTAATGAGTCAGATGAGGTTCTGGTGAAGTCATCTTTCCTAGCTGAATTACAACGCCGGGTACTTAAGGCTGAAGCTGCCCTGAGAGAGAAAGAAGAGGAAAATGACATCCTACAACAACGTCTCCAACAGTATGATAACAGATGGTCTGAATATGAATTGAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCCCTACAATCTAGCCTATCCATTGCAAAGAAGAGTCTTGCTATGGATGATTCTGAAAGGAATTCAGATGCATCTGTTAATGCAAGTGAGGACAGGGAATATAGCTGGGATATGGGAGCTAATCATAGGCGCCAAGAAAGCAATGGAACAAGGTCAATGAGTGCTGGTTTAAGTGTTATAAGCCGGTTGGCCGAAGAATTCGAGCAGAGGAGTCAAGTATTTGGTGATGATGCAAAGTTCTTGGTCGAGGTAAAATCTGGCCAAGTTGAAGCCAGTTTGAACCCCGACCGAGAACTTAGGAGGTTAAAGCAGATGTTCGAAGCTTGGAAGAAGGATTATAGTGCAAGACTGCGGGAAACAAAGGTCATTTTGAATAAGCTTGGAACTGAAGATGGGTCAATTGAGAAAGCAAAAAAGAAATGGTGGGGAAGAAGGAATAGCACAAGGATAAATTGA 3441 0.4103 MSKTSSVPPAFQSIKSLPPSFKVANNLNGGLSTKHGDVRLKSGDPIRSSSPANGALVVEVSKEVHDRAGNMDVFDEDSPYSGQVRLLEEEDRPSNGGEDSESVPLPLPSNSASSRESRWCDTTPYASKKKVQCWLQLSNGNWELVKIITSSGSESVVSLPDGKVLKVHDESLVSANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQNMIYTKAGPVLVAINPFKKVPLYSNDYIEAYKRKSIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEVSSLKFTSVKLEKYVVLISKHSRVVQCNEGERSYHIFYQLCAGAPPSLRDKLNLRSAEDYKYLRQSSCYSIVGVNDAEEFRTVMEALDVVHISKEDQESVFAMLAAVLWLGNVSFTVIDNENHVQAVEDEGLSSVAKLIGCDIEDLKLTLTTRKMKVGNDNIVQKLKLSQAIDARDALAKSIYSCLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGERDKAFTVCHYAGEVIYDTTGFLEKNRDLLHLDSIQLLSSSTCHLPQKFATQMLTQTEKPAVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPGLYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLENVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQVGVLEDTRNRTLHGILRVQSCFRGYQARSYRKNLWRSITTLQSFIRGDKIRKEYAVSLRRHRAAVVIQKKAKTILARNRLKTTIDAAVVIQSFIRGWLVRRCSGDLGLLKSGGTKTNESDEVLVKSSFLAELQRRVLKAEAALREKEEENDILQQRLQQYDNRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSERNSDASVNASEDREYSWDMGANHRRQESNGTRSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLNPDRELRRLKQMFEAWKKDYSARLRETKVILNKLGTEDGSIEKAKKKWWGRRNSTRIN 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241869g00007 1146 PANTHER MYOSIN 175 1138 - -
Stsc241869g00007 1146 Coils Coil 941 982 - -
Stsc241869g00007 1146 MobiDBLite consensus disorder prediction 104 119 - -
Stsc241869g00007 1146 SMART MYSc_2a 175 822 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc241869g00007 1146 PRINTS Myosin heavy chain signature 265 290 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc241869g00007 1146 PRINTS Myosin heavy chain signature 560 588 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc241869g00007 1146 PRINTS Myosin heavy chain signature 211 230 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc241869g00007 1146 PRINTS Myosin heavy chain signature 507 535 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc241869g00007 1146 MobiDBLite consensus disorder prediction 24 54 - -
Stsc241869g00007 1146 Gene3D - 754 822 - -
Stsc241869g00007 1146 Gene3D - 517 711 - -
Stsc241869g00007 1146 Pfam IQ calmodulin-binding motif 897 913 IPR000048 GO:0005515
Stsc241869g00007 1146 Pfam IQ calmodulin-binding motif 827 841 IPR000048 GO:0005515
Stsc241869g00007 1146 Pfam Myosin head (motor domain) 183 297 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc241869g00007 1146 Pfam Myosin head (motor domain) 307 809 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc241869g00007 1146 ProSiteProfiles IQ motif profile. 897 924 IPR000048 GO:0005515
Stsc241869g00007 1146 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 128 177 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc241869g00007 1146 FunFam Myosin heavy chain 331 387 - -
Stsc241869g00007 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 867 IPR027417 -
Stsc241869g00007 1146 Gene3D Kinesin motor domain 132 302 IPR036961 -
Stsc241869g00007 1146 Gene3D Kinesin motor domain 318 750 IPR036961 -
Stsc241869g00007 1146 FunFam Unconventional myosin-XIX 519 711 - -
Stsc241869g00007 1146 Gene3D - 874 916 - -
Stsc241869g00007 1146 Gene3D - 825 873 - -
Stsc241869g00007 1146 CDD MYSc_Myo8 195 809 IPR036022 -
Stsc241869g00007 1146 ProSiteProfiles Myosin motor domain profile. 181 821 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc241869g00007 1146 Gene3D Myosin VI head, motor domain, U50 subdomain 392 689 - -
Stsc241869g00007 1146 ProSiteProfiles IQ motif profile. 825 852 IPR000048 GO:0005515
Stsc241869g00007 1146 SMART iq_5 894 916 IPR000048 GO:0005515
Stsc241869g00007 1146 SMART iq_5 822 844 IPR000048 GO:0005515
Stsc241869g00007 1146 SMART iq_5 845 867 IPR000048 GO:0005515
Stsc241869g00007 1146 SMART iq_5 871 893 IPR000048 GO:0005515
Stsc241869g00007 1146 MobiDBLite consensus disorder prediction 1008 1022 - -
Stsc241869g00007 1146 Gene3D - 331 390 - -
Stsc241869g00007 1146 MobiDBLite consensus disorder prediction 88 119 - -
Stsc241869g00007 1146 MobiDBLite consensus disorder prediction 1008 1047 - -
Stsc241869g00007 1146 ProSiteProfiles IQ motif profile. 848 875 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241869g00007 Stsc-Chr241869 13930 21653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241869g00007 7 1144 Myosins gene family AT1G50360 71.758 0.0 1687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241869g00007 - K10357 gmx:100782618 1920.59