Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241868g00006 ATGGGTGGCAACGGCAAGCACCGTTGGAGAATTTCCTTCCATCGCCATTCCAAGCTCGAACACCAACAGCCCAAGCATCCCCCACCCAACGAGTTCATATGCCCCATTTCCGGCTCATTAATGTCCGACCCGGTCGTCGTCGCTTCGGGTCAAACCTTCGAGCGCCTTTCAGTTCAAGTCTGCAACGACCTCTCCTTCTCCCCTACCCTACCCGACGGGACCCGACCCGATTTCTCAACCCTTATCCCCAATCTCAACATCAGAACCAGCATCCACAACTGGTGCAAGAAAACCAACACCATACTCCCGCCACCACCGGATTACTCCTCACTCAAGCGCATCGTCAAGGACGCAATCGCCGCTGTCGCTCCTCCGCCGCCTCTGCCGGAGCCGGACATTAGGGTTTCTGAAAAGGAGCTCCTCAAGGCGGTGCCGGACAATCCGCCAGTGATATTCTCCCACGCCGCAACCGAGTTAGGTCCCCGAGTCAACCACTTCAACTCGGGATCCTCGGAGGAGTCCGTCGTCATCGGTGGCGCCAGTCCGGGTACTCCGCTTCCGTTCACGGTTCGGCCGACGTGCTTCTCGTCGTCGTCGTCCGTCTCCTCCGTTGAAATTACCGAGGTCGAGATCCAAGGGCAAAACCCTAGCGGGCCTCTTTCAGATGAAGAAGAAATGCTGGTGGCGAAGATGAAGAGCAACGAGGTGTTCGAGCAAGAAGAAGGAGTGATCTCTCTCCGGAGCCTGACCCGGAGCAGCGAGGAAGCAAGGGTTTCACTCTGCACGCACCGAATCCTCTCCCCTCTGCGTTCTCTCGTGGCATCGCGGTACGGCGTCGTTCAGGTCAACGCTGTTGCCTCGCTGGTCAACCTTTCGCTTGAGAGACAAAACAAGGTGAGGATCGTGCGGTCAGGATTCGTTCCGTACCTGATCGACGCACTCAAGGGCGGATCCACTGAGACGCAGGAACACGCTGCAGGCGCGCTTTTCAGTTTAGCTTTGGATGATGATAATAAGATGGCGATTGGGGTCCTCGGCGCGTTGCAGCCGCTTATGCACGCGCTCCGTTCCGAGTCCGAGCGAACTCGGCATGACTCAGCGCTAGCGCTGTACCACTTGACTCTGGTTCAGAGTAACCGAGTCAAGCTCGTGAAACTCGGCGTGATCCCAACCTTGCTGTCGATGGTGAAATCTGGAACCTTCGCGAGTAGGGTTCTGTTGATTCTTTGTAATCTTGCGGTTTGCATGGAAGGGAGGACGGCGATGCTGGATGCTGATGCGGTGGAGTGTTTTGTGGGTTTGTTGAGGGAGAACGAGTTGGACTCGGAGTCGACTCGGGAGAACTGTGTGGCGGCACTGTATGCGCTGAGTCACAGGAGCCTGAGGTTCAAGGGGCTGGCGAGGGAGGCGAGGGCGATGGAGGTGCTGAAGGAGGTGGCGGAGGTGACAGGGACAGAGAGGGCGAGGGAGAAGGCCAAGAGGATTTTGCAGATGATGAGGGCTGCCGGTGATGGGGATGATGATGATGGGTTGGAGCATGATGGGGTTTTGGAATCGGGCGGGTTGACTCGGATGAGGTACCGAGTTGGGGGCAATGGAGGCAGGAACAATGCCAGCACCACTACCTTCTAG 1632 0.5735 MGGNGKHRWRISFHRHSKLEHQQPKHPPPNEFICPISGSLMSDPVVVASGQTFERLSVQVCNDLSFSPTLPDGTRPDFSTLIPNLNIRTSIHNWCKKTNTILPPPPDYSSLKRIVKDAIAAVAPPPPLPEPDIRVSEKELLKAVPDNPPVIFSHAATELGPRVNHFNSGSSEESVVIGGASPGTPLPFTVRPTCFSSSSSVSSVEITEVEIQGQNPSGPLSDEEEMLVAKMKSNEVFEQEEGVISLRSLTRSSEEARVSLCTHRILSPLRSLVASRYGVVQVNAVASLVNLSLERQNKVRIVRSGFVPYLIDALKGGSTETQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGVIPTLLSMVKSGTFASRVLLILCNLAVCMEGRTAMLDADAVECFVGLLRENELDSESTRENCVAALYALSHRSLRFKGLAREARAMEVLKEVAEVTGTERAREKAKRILQMMRAAGDGDDDDGLEHDGVLESGGLTRMRYRVGGNGGRNNASTTTF 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241868g00006 543 Pfam U-box domain 29 98 IPR003613 GO:0004842|GO:0016567
Stsc241868g00006 543 Pfam Armadillo/beta-catenin-like repeat 335 374 IPR000225 GO:0005515
Stsc241868g00006 543 Pfam Armadillo/beta-catenin-like repeat 296 333 IPR000225 GO:0005515
Stsc241868g00006 543 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Stsc241868g00006 543 Gene3D - 220 401 IPR011989 -
Stsc241868g00006 543 SUPERFAMILY RING/U-box 23 103 - -
Stsc241868g00006 543 Gene3D - 402 506 IPR011989 -
Stsc241868g00006 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 102 IPR013083 -
Stsc241868g00006 543 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 305 342 IPR000225 GO:0005515
Stsc241868g00006 543 PANTHER U BOX DOMAIN-CONTAINING 23 500 - -
Stsc241868g00006 543 FunFam RING-type E3 ubiquitin transferase 222 499 - -
Stsc241868g00006 543 SUPERFAMILY ARM repeat 226 499 IPR016024 -
Stsc241868g00006 543 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
Stsc241868g00006 543 SMART arm_5 376 414 IPR000225 GO:0005515
Stsc241868g00006 543 SMART arm_5 415 458 IPR000225 GO:0005515
Stsc241868g00006 543 SMART arm_5 335 375 IPR000225 GO:0005515
Stsc241868g00006 543 SMART arm_5 294 334 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241868g00006 Stsc-Chr241868 21760 23391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241868g00006 1 531 U-box Gene Family AT5G65200 56.522 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241868g00006 - - aip:107643932 965.296