Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241866g00006 ATGATCATTACCTTCTTACGCATGAAAGCATTCATCTGTTTCTTCTTCTTTGTATTTGTCACAACATTGGGGAATGATCTCTTAAGCTGTGAGACAACTGCACCAGATGCATCTGGCTACAGCTGCATACAAAATAATGTGTCACTCAATAATAATAATAATATTAACAGCTCTATTCAATTTCAATGTGCAACATTTGCACTCATTCACACAAATCCATACTATTCCTCTCTCTCAAACCTCACCCATTACTTGGGACTTAACCGTTTTGTGATAGCAAAATCAAATGGTTTCTCACCAGAAAAGACTGAGATCCTCTCCAATGATCAACCCCTTTTGATACCAATTGATTGCAAGTGCAGCAAAGATGGTTTCTTCTATGCTGAGTTGACCAAAACAACCATCAAAGGTGAGAGCTTCTATGGCATAGCTGAATCACTTGAAGGCTTAACTAGCTGCAAGGCTATAAAAGATCGAAACCCCGGCGTGCCGCCTTCGGACCTTGACGGAGAATTCAAGTTGCTGGTTCCATTGAGATGTGCATGTCCAGTTTCATCTTCTCAGGAACAGAGGATTCTGCTTTCTTACCCTGTAAGTAAAGGCGATACGATTTCGAATTTGGCTTCAAAGTTCAATGTTACTATAGAATCCATAACTTCTGCAAATAACTTATCAGAAGGGTTTGGAATTGGAACTCAAAACCTTACACCTTTTACCACTCTTCTGATTCCATTGTTAAATGATAATCCTGTGGCTAAACCCTCGAATAACCCCGGTTTTCGGGTGATTAGTCCACATAAGAAAACAAAAATGTGGAGAACTGAATTGTGTATAGGCCTAGCTGGAGTTGCACTTGGAATCTTCATTGCTTCATTAGTAGGATTCTTTTTCATCCGATTGAAGAGCAAGAAGCAGAGGGTGAAGAACAGTAAGTGTAACAAAGAGGTAGATATGGAGCTTCAACATCTGAATCTCAGTGTAAGGACTACCAGTGACAAAAAGGTCTCATTCGAGGTTCCGAACGACGGGAAGATCCTCGAAGCTTCGACGCCGCGAAAGATGTTTCTTGAGACATACTCGATGGAGGAAATCCGCAAGGCAACAGAGGAATTCAGCTCGGGAAATCACATTGAGGGGCCGGTGTTCCATGGCAGGTTGAATGGCAAGAACATAGCAGTAAAAAGAACAAGAAACGACATCGTTTCAAAGATAGATTTCGGCCTCTTCCAAAACTCAATTCACAGGCACCCCAACATTCTCATGCTTCTTGGAACAACAAGCCTGCTGGTGGAGGAGGAGGGGGATCAAGATTCCTACCTGGTTTTTGAGTATGCTAAAAACGGATCCTTGAAAGACTGGCTTCACGGTGGATTGGCCATCAAGAATCAGTTCATTGCATCCTGCTACTGTTTCTTGACATGGAGCCAGAGGCTCCGGATTTGCCTCGACGTCGCGAGAGCCTTGCAGTACATGCACAATCACATGATCCCAAGCTATGTTCACAGGAACATCAAGAGTAGGAACATCTTCTTGGATGAGGAGTTTGGTGCAAAAGTTGGGAACTTCGGTATGGCAATGTGTGGTGAGAATGAGACTGAGGACCCACATTTCTATTCCACAAACCCTGCTTCTTGGAGCCTTGGATATTTGGCACCTGAATATGTTCACCAAGGTATAGTTTCACCGGGAATTGATGTGTATTCTTATGGCGTGGTTTTGTTGGAGGTTTTGTCAGGTCAGACACCAATAAGCAGGCCTAATGAGAAGGGTGAAGGGAGTGTTTGGCTGACGGATAAGATCAGGTGGATTTTGGGGTCGGAGAATAGTGGGAATGAGCTGAGGGAGTGGATTGATGGTGCTCTAGGGGGGAACTATTCGGTTGATGCAGCTGTGGAGTTGGCTAACATTGCAAGGGCTTGTGTGGAGGATGAGGCTTGTTTGAGACCAAGTGCTAATGAAATTGTTGAGAGGATTTCAAGATTGGTGGAGGAGTTACCGGATGGAGAACACATGTTGATCAGTGAAAGTTCTAGCAAGCCATTGGTTAATGCAGTATGA 2058 0.4359 MIITFLRMKAFICFFFFVFVTTLGNDLLSCETTAPDASGYSCIQNNVSLNNNNNINSSIQFQCATFALIHTNPYYSSLSNLTHYLGLNRFVIAKSNGFSPEKTEILSNDQPLLIPIDCKCSKDGFFYAELTKTTIKGESFYGIAESLEGLTSCKAIKDRNPGVPPSDLDGEFKLLVPLRCACPVSSSQEQRILLSYPVSKGDTISNLASKFNVTIESITSANNLSEGFGIGTQNLTPFTTLLIPLLNDNPVAKPSNNPGFRVISPHKKTKMWRTELCIGLAGVALGIFIASLVGFFFIRLKSKKQRVKNSKCNKEVDMELQHLNLSVRTTSDKKVSFEVPNDGKILEASTPRKMFLETYSMEEIRKATEEFSSGNHIEGPVFHGRLNGKNIAVKRTRNDIVSKIDFGLFQNSIHRHPNILMLLGTTSLLVEEEGDQDSYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVARALQYMHNHMIPSYVHRNIKSRNIFLDEEFGAKVGNFGMAMCGENETEDPHFYSTNPASWSLGYLAPEYVHQGIVSPGIDVYSYGVVLLEVLSGQTPISRPNEKGEGSVWLTDKIRWILGSENSGNELREWIDGALGGNYSVDAAVELANIARACVEDEACLRPSANEIVERISRLVEELPDGEHMLISESSSKPLVNAV 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241866g00006 685 ProSiteProfiles LysM domain profile. 194 243 IPR018392 -
Stsc241866g00006 685 SUPERFAMILY Protein kinase-like (PK-like) 353 664 IPR011009 -
Stsc241866g00006 685 Gene3D Phosphorylase Kinase; domain 1 345 444 - -
Stsc241866g00006 685 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 17 665 - -
Stsc241866g00006 685 ProSiteProfiles Protein kinase domain profile. 367 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241866g00006 685 Pfam LysM domain 196 244 IPR018392 -
Stsc241866g00006 685 FunFam PTI1-like tyrosine-protein kinase 3 445 671 - -
Stsc241866g00006 685 CDD LysM 195 243 IPR018392 -
Stsc241866g00006 685 SUPERFAMILY LysM domain 195 244 IPR036779 -
Stsc241866g00006 685 Gene3D LysM domain 194 244 IPR036779 -
Stsc241866g00006 685 Pfam Protein kinase domain 387 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241866g00006 685 Gene3D Transferase(Phosphotransferase) domain 1 445 674 - -
Stsc241866g00006 685 SMART LysM_2 195 244 IPR018392 -
Stsc241866g00006 685 SMART LysM_2 131 177 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241866g00006 Stsc-Chr241866 46937 49078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241866g00006 62 682 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 41.294 1.57e-148 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc241866g00006 Pkinase 2.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241866g00006 - - gmx:100816082 892.493