Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241864g00014 ATGGTGTCGAGGGGGCTGTTCGGGTGGTCCCCGCCGCACATACAGCCTCTCACGCCGGTCTCCGAGGTTTCGGAGCCGCCGGAGTCGCCGTCTCCGTATGTTGATCCGAGTGCCGAGACTTCCGCGTCGCAACAGGTTGAGGTGGAGGAGGAGATCGAGGAGCCGGAGGAGGTTGAGCCACCGCCAGCTGCCGTGCCTTTCTCCCGCCTCTTCGCCTGTGCCGACCGTTTTGACTGGTTCCTTATGATCCTCGGCTCCGTCGCCGCCGCAGCTCACGGCACTGCTCTCGTCGTTTACTTGCATTTCTTTGCCAAAATCATCCAGGTTCCTCAGCAAGATGACCAGTTTCACAGGTTCAAGGAGCTGGCTTTAAGCATTGTTTATATTGCTGCGGGAGTTTTCGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTTTGACCGGAGAACGGCAGACAGCTGTTATCAGGTCAAAATATGTTCAAGTATTGCTTAATCAAGATATGAGCTTTTTTGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGCGATGTTTTGCTCATTCAGTCTGCACTTAGTGAAAAGATTGCATTGATAACATTAGCTACAGGTCCATTTATCGTTGCGGCAGGAGGAATATCAAATATATTCCTTCATAGGCTTGCAGAGAATATCCAGGATGCATATGCTGAAGCAGCCAGCATTGCAGAACAGGCAATTTCGTATATAAGGACCTTGTATGCATTTACAAATGAAACTCTGGCTAAATATTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGCATATTAATCAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACATATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGTTCTTGGTTGTGCATGGAAAAGCTCATGGTGGTGAAATTATAACAGCTCTGTTTGCTGTGATTCTAAGTGGCTTGGGATTGAATCAAGCAGCAACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCTTATAGATTGTTTGAGATGATAAGCCGGTCATCCTCATCTTTTAATCATGATGGCAGTGCCCCTGCTTCAGTGCAAGGGAATATAGAGTTCCGGAATGTTTATTTCAGTTATCTTTCTCGTCCCGAAATCCCTATCTTGAGTGGGTTTTATCTCACTGTTCCTGCTAAGAAAGCTGTGGCACTTGTTGGCAGAAATGGCTCTGGCAAAAGTAGTATTATTCCACTCATGGAGAGATTCTATGATCCTACATTAGGTAATTGTTTTCTAATTCTTAAGTGCATATATGCCCTGTTATCCATAGCACTCATGAGTCATTTCAGACTAAAATCTATTTTTTCTATGGTTCAGGAGAAGTTCTTTTAG 1404 0.4487 MVSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYVDPSAETSASQQVEVEEEIEEPEEVEPPPAAVPFSRLFACADRFDWFLMILGSVAAAAHGTALVVYLHFFAKIIQVPQQDDQFHRFKELALSIVYIAAGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAISYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVVHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFNHDGSAPASVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGNCFLILKCIYALLSIALMSHFRLKSIFSMVQEKFF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241864g00014 467 SUPERFAMILY ABC transporter transmembrane region 68 350 IPR036640 GO:0005524|GO:0016020
Stsc241864g00014 467 Pfam ABC transporter 396 433 IPR003439 GO:0005524
Stsc241864g00014 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 435 IPR027417 -
Stsc241864g00014 467 MobiDBLite consensus disorder prediction 1 61 - -
Stsc241864g00014 467 Gene3D - 365 434 IPR027417 -
Stsc241864g00014 467 PANTHER ABC TRANSPORTER B FAMILY 196 433 IPR039421 -
Stsc241864g00014 467 Pfam ABC transporter transmembrane region 82 200 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241864g00014 467 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 83 342 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241864g00014 467 Coils Coil 221 241 - -
Stsc241864g00014 467 CDD ABC_6TM_Pgp_ABCB1_D1_like 82 350 - -
Stsc241864g00014 467 Gene3D ABC transporter type 1, transmembrane domain 62 199 IPR036640 GO:0005524|GO:0016020
Stsc241864g00014 467 Gene3D ABC transporter type 1, transmembrane domain 200 364 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241864g00014 Stsc-Chr241864 57169 60139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241864g00014 78 452 Calmodulin-binding Proteins AT2G36910 25.553 3.40e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241864g00014 K05658 - gmx:100799399 742.265