Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241864g00008 ATGGTTCTATCGAACAAGAAGCTGAAGCAGAAGCTTAGAGCTGTATTAGCCAAAAAGCAAGCCAACAACTCTGAGGTAGCTCTTGTTGAGGCCCCTTCTTCTTCTAACCCACATTCTCTCAAGACTCTTCTTGACTCTGCTGCCCACAAGCCCGTATTGTCCAAGAGAGAGAAACGCCGAAAGCTTCGATCTTTGGAATACCCTCAACCTGAGGCTTCTCCACAAGCTGCCAATGAAGTTGAAGGAAGCAACAAGGAAAATGGGTCAGAGGCTTTGGCTGATAAGAAGAAGAATAAGAAGAGGAAGAGGAAGGTAAAGGAGGATGCTGACGTGGCTACTGAAGCTCCCAACGATGCTGAGAAGTCGACGAACACGAAAAAGAAGCAGAAGCAGAAGAAGAAGAAAAAGAAGGCCAAAACGGTGGAGCAAAACAGTTCTAATCAGGAAGGGGAAGTGCCACAAGCTACAGGGTTGAATGAGAGTAATAATAATACCAATGCTAATAGCGGGCAAGATGGTTGTGATGATCCTACAAAGGTTTATGTGGGAGGAATTCCCTATTACTCAACGGAGGATGATATTAGAAGTTATTTTGAGAGCTGTGGCACCATAACTGAAGTTGATTGCATGTGTTTTCCTGAGAGTGGCAAGTTTAGAGGGATTGCCATTATCAGCTTCAAGACAGAAGCAGCAGCAAAACGTGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGTCAATAAAGATAAGGTATCAGATTTTGCTCCGAAGATTGTGGAAGGATACAATAGAATATATGTTGGGAATTTGTCATGGGATATAACAGAGGAAGAACTCAAGAAATTCTTCTCGAATTGCAACATAGCATCACTGCGATTTGGTATGGACAAGGATACTGGAGAATTCCGAGGGTATGCGCATGTGGATTTCAGCGATAGTCAGTCACTAAAAACAGCTCTTACAATGGACCAAAAGGTTTTGTCTGGGAGACCTGTCAAGATAAGTTGTGCAGTTCCTTTGAAGAAGAAACCAACATCGAATACTAGCGGTGCGACTACAACTACAACTACAAGTAATGTGGTTGATGGCGAGAAATCAGCTCCAACTGTTCCAGCCGTAAGTGGCAAGATAAAGAGGAGGACATGCTATGAGTGTGGCGAAAAGGGACATCTTTCATCAGACTGCCCAAAGAAACAAACTATCGATTCAACATCAACCTGA 1257 0.4344 MVLSNKKLKQKLRAVLAKKQANNSEVALVEAPSSSNPHSLKTLLDSAAHKPVLSKREKRRKLRSLEYPQPEASPQAANEVEGSNKENGSEALADKKKNKKRKRKVKEDADVATEAPNDAEKSTNTKKKQKQKKKKKKAKTVEQNSSNQEGEVPQATGLNESNNNTNANSGQDGCDDPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMCFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRVNKDKVSDFAPKIVEGYNRIYVGNLSWDITEEELKKFFSNCNIASLRFGMDKDTGEFRGYAHVDFSDSQSLKTALTMDQKVLSGRPVKISCAVPLKKKPTSNTSGATTTTTTSNVVDGEKSAPTVPAVSGKIKRRTCYECGEKGHLSSDCPKKQTIDSTST 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241864g00008 418 SMART rrm1_1 276 347 IPR000504 GO:0003723
Stsc241864g00008 418 SMART rrm1_1 179 251 IPR000504 GO:0003723
Stsc241864g00008 418 MobiDBLite consensus disorder prediction 27 42 - -
Stsc241864g00008 418 Pfam Zinc knuckle 392 409 IPR001878 GO:0003676|GO:0008270
Stsc241864g00008 418 MobiDBLite consensus disorder prediction 399 418 - -
Stsc241864g00008 418 MobiDBLite consensus disorder prediction 355 376 - -
Stsc241864g00008 418 Coils Coil 5 25 - -
Stsc241864g00008 418 Gene3D - 113 266 IPR012677 -
Stsc241864g00008 418 SMART c2hcfinal6 393 409 IPR001878 GO:0003676|GO:0008270
Stsc241864g00008 418 MobiDBLite consensus disorder prediction 143 173 - -
Stsc241864g00008 418 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 90 254 - -
Stsc241864g00008 418 MobiDBLite consensus disorder prediction 355 383 - -
Stsc241864g00008 418 ProSiteProfiles Zinc finger CCHC-type profile. 394 409 IPR001878 GO:0003676|GO:0008270
Stsc241864g00008 418 CDD RRM1_PHIP1 180 251 IPR034361 -
Stsc241864g00008 418 MobiDBLite consensus disorder prediction 27 177 - -
Stsc241864g00008 418 SUPERFAMILY RNA-binding domain, RBD 158 259 IPR035979 GO:0003676
Stsc241864g00008 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 255 IPR000504 GO:0003723
Stsc241864g00008 418 SUPERFAMILY RNA-binding domain, RBD 269 355 IPR035979 GO:0003676
Stsc241864g00008 418 Coils Coil 119 139 - -
Stsc241864g00008 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 351 IPR000504 GO:0003723
Stsc241864g00008 418 SUPERFAMILY Retrovirus zinc finger-like domains 387 412 IPR036875 GO:0003676|GO:0008270
Stsc241864g00008 418 MobiDBLite consensus disorder prediction 104 125 - -
Stsc241864g00008 418 Gene3D - 270 360 IPR012677 -
Stsc241864g00008 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 345 IPR000504 GO:0003723
Stsc241864g00008 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 246 IPR000504 GO:0003723
Stsc241864g00008 418 Gene3D - 386 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241864g00008 Stsc-Chr241864 38666 41016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241864g00008 164 349 Eukaryotic Initiation Factors Gene Family AT3G16380 28.718 4.12e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241864g00008 - - adu:107467708 657.136