Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241864g00005 ATGATGATGACCTTGATGAAGAGAGAAACTACTCAAGCTGAAAGCATGGCCATGGCCAACTATCTCATGCTGCTTTCTCGTGCTGGAGGAGTAGTTGACAGAACCACCACCATCACCAGCAACCGTGTATTCGAGTGCAAGACATGTAACAGGCAATTCTCATCGTTTCAGGCACTGGGAGGCCACCGTGCGAGCCACAAGAAGCCAAGGCTCACCAACGGAGAAGACAGTAGCAGTGACGGCAGCCATGGGTCTCCGGCAAAGCCCAAGACTCACGAGTGCTCCGTTTGCGGCTTGGAGTTTGCTATTGGCCAAGCTTTGGGTGGCCACATGAGGCGTCATAGAGCACAACCACCGCCACCTCCTCCTCCTCCTCCTTCAGACGACGCCAATAATAATCATCTTAAGAGAAAGAGACAAGTGATGTTTGTGGATCTGAACTTGACGCCCTTTGAGAATGATTTGGCATTCTTGAAGATTGGACAACCACCAACTCATGCTCATAATAACTTGGTCCATTGTTTAAACTAG 531 0.4972 MMMTLMKRETTQAESMAMANYLMLLSRAGGVVDRTTTITSNRVFECKTCNRQFSSFQALGGHRASHKKPRLTNGEDSSSDGSHGSPAKPKTHECSVCGLEFAIGQALGGHMRRHRAQPPPPPPPPPSDDANNNHLKRKRQVMFVDLNLTPFENDLAFLKIGQPPTHAHNNLVHCLN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241864g00005 176 PANTHER ZINC FINGER PROTEIN ZAT5 8 153 - -
Stsc241864g00005 176 Pfam C2H2-type zinc finger 43 69 - -
Stsc241864g00005 176 Pfam C2H2-type zinc finger 92 117 - -
Stsc241864g00005 176 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Stsc241864g00005 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Stsc241864g00005 176 MobiDBLite consensus disorder prediction 59 91 - -
Stsc241864g00005 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Stsc241864g00005 176 SMART c2h2final6 92 114 IPR013087 -
Stsc241864g00005 176 SMART c2h2final6 44 66 IPR013087 -
Stsc241864g00005 176 MobiDBLite consensus disorder prediction 115 129 - -
Stsc241864g00005 176 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Stsc241864g00005 176 Gene3D Classic Zinc Finger 42 114 - -
Stsc241864g00005 176 MobiDBLite consensus disorder prediction 108 133 - -
Stsc241864g00005 176 SUPERFAMILY beta-beta-alpha zinc fingers 42 114 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241864g00005 Stsc-Chr241864 26756 27431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241864g00005 6 158 C2H2 Transcription Factor Family AT2G37430 44.379 3.06e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241864g00005 zf-C2H2_6 3.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241864g00005 - - gmx:100500371 182.185