Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241864g00001 ATGGTGAAGATGATGGAATGGCAGAAGCAGTTGCATAATAATAATGAGAAGGGAGACAACAATAACAATAACAATAACATGATGTATGTGAAGGTCATGACTGATGAACAGTTAGAAACTCTCAGGAAGCAGATTGCAGTTTATGCCACTCTCTGTGAACAGCTCGTTGAGATGCATAGAACCCTCTCCACTCACCACGATCTTGCAGGAGTTCGGGTGGGAAATATATACTGTGATCCATTGATGACATCATCAGGGCAGAAAATAACATCTAGGCAGAGGTGGACACCAACACCATTGCAGCTTCAAATTCTTGAGCGAATATTTGATCAAGGGAATGGAACTCCCAGCAAGGAGAAGATTAAAGAGATCACTGCTGAACTTAGCCACCATGGCCAGATTTCTGAAACAAATGTATACAATTGGTTCCAGAATAGGCGTGCAAGATCAAAGAGGAAGCTTCAAAACAATGTGGCACCTACTACTGTTATTGAATCAGAGGTAGATGCTGAGGTTGATTCCAAGGATAAGAAGACAAAGCCAGAGGAGTTAATTAGTTCCCAACAACAACATACTACTCGGTCAGAAAAGTTGTGCTTTCATCAGAACAATGAGTTGCACTACTTGAATCAACATTCAAACAACAACAACAGCAAATCAGATCCCATTTTCACAAGAAATTTTAGTCGTATGCCTGTTTTTGATGATGTTCTATCAAACTCAAGGGGAGACTATCTAGATGGAAAAATGGAAGTAGGTGGTGGTGGGATGTATAATTTATATCAGCAAGCAGGGGACTATAATTTGGGGGGTTGA 816 0.4056 MVKMMEWQKQLHNNNEKGDNNNNNNNMMYVKVMTDEQLETLRKQIAVYATLCEQLVEMHRTLSTHHDLAGVRVGNIYCDPLMTSSGQKITSRQRWTPTPLQLQILERIFDQGNGTPSKEKIKEITAELSHHGQISETNVYNWFQNRRARSKRKLQNNVAPTTVIESEVDAEVDSKDKKTKPEELISSQQQHTTRSEKLCFHQNNELHYLNQHSNNNNSKSDPIFTRNFSRMPVFDDVLSNSRGDYLDGKMEVGGGGMYNLYQQAGDYNLGG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241864g00001 271 Pfam Homeodomain 92 152 IPR001356 GO:0003677
Stsc241864g00001 271 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 263 IPR044559 GO:0003700
Stsc241864g00001 271 ProSiteProfiles 'Homeobox' domain profile. 88 153 IPR001356 GO:0003677
Stsc241864g00001 271 MobiDBLite consensus disorder prediction 169 194 - -
Stsc241864g00001 271 CDD homeodomain 92 153 IPR001356 GO:0003677
Stsc241864g00001 271 MobiDBLite consensus disorder prediction 169 184 - -
Stsc241864g00001 271 SUPERFAMILY Homeodomain-like 90 156 IPR009057 -
Stsc241864g00001 271 Gene3D - 93 158 - -
Stsc241864g00001 271 SMART HOX_1 90 157 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241864g00001 Stsc-Chr241864 1683 3715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241864g00001 4 271 Wox Gene Family AT4G35550 46.980 2.36e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc241864g00001 Homeodomain 9.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241864g00001 - - ahf:112777216 439.884