Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241863g00001 ATGATTGAGCCAAACTTCGTCGACGACGTAGACTGCGGCAGCTTCTTCGACCACATTGACGACCTCCTCGACTTCCCCGCCGACGACGCTGCCACCGCTGACGCCTCCTTGCCCGTCGGTGCCGCCAGCGCCGGTAACTCTGAAACTCCGGCGAGCTTCTGGCCTTCCGAGTCAGCCAGCGCGCTGCCAGCCACAGACACGGCTTTCCCCGGAGGCGACGCCGTGACGGACCTCTCGGCGGAAATTTCCGTTCCGTATGAAGACATTGTGCAGTTGGAATGGCTCTCCACTTTTGTGGAGGACTCTTTCTCTGGTAGGAGCCTTACCATGAAGAAGGTGGAGCCACCCTCCACCACCACCACCACCACCACTACCAAGGAGGATTTGACTCGTTCCCAGTTCCGGACATCAAGTCCAGTTTCAGTTCTTGAGAGCAGCAGCTCCTGCTCCGGCGAGAAGGTGGCAGCAGCTCAATGCCCGGAGATTTATATCCCGGCTGTGCCTTGTGGCCGAGCACGCAGCAAGCGTCAGCGTCCTGCGAGCTTCAAGCCACATCCGGTGATGCAACTCATCTCCCCTGCTTCCTCTGTTGGTGAGAACACACAGCCTAATGTCATTGTTAAGGCTTCATCAGATTCTGAGAATTTCGCGGAGTCTCATCCTGCTATAATCAAGTTAGCAAAGCAAGCTAGTTATGGAGAGCACAAGAAGAAGAAGAAAAGCAAAGCACCTAATAATCCTTTGGCTGAAGATGATAATGATAATGATGGTAACCAGAATAATGGTGCAGTTAGGAAATGCATGCACTGTGAGATAACAAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCGTGTGGTGTTCGCTACAAGTCCGGCCGCCTCTTCCCCGAATACCGGCCTGCTGCGAGTCCTACATTCTGCCCTGCTGTGCACTCCAATTCACACAAGAAGGTCCTTGAAATGAGAAACAAATTTGGCTGCTCAACTGATGATTCACCTGCTTCTCCTGAACTCATTCCAAACACTTCAAGACTTGGATTGGAATACATGTGA 1074 0.5307 MIEPNFVDDVDCGSFFDHIDDLLDFPADDAATADASLPVGAASAGNSETPASFWPSESASALPATDTAFPGGDAVTDLSAEISVPYEDIVQLEWLSTFVEDSFSGRSLTMKKVEPPSTTTTTTTTKEDLTRSQFRTSSPVSVLESSSSCSGEKVAAAQCPEIYIPAVPCGRARSKRQRPASFKPHPVMQLISPASSVGENTQPNVIVKASSDSENFAESHPAIIKLAKQASYGEHKKKKKSKAPNNPLAEDDNDNDGNQNNGAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVLEMRNKFGCSTDDSPASPELIPNTSRLGLEYM 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241863g00001 357 PIRSF Txn_fac_GATA_plant 1 348 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc241863g00001 357 SMART GATA_3 261 311 IPR000679 GO:0006355|GO:0043565
Stsc241863g00001 357 ProSitePatterns GATA-type zinc finger domain. 267 292 IPR000679 GO:0006355|GO:0043565
Stsc241863g00001 357 Gene3D - 263 311 IPR013088 GO:0006355|GO:0008270
Stsc241863g00001 357 CDD ZnF_GATA 266 323 IPR000679 GO:0006355|GO:0043565
Stsc241863g00001 357 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 265 324 - -
Stsc241863g00001 357 ProSiteProfiles GATA-type zinc finger domain profile. 261 297 IPR000679 GO:0006355|GO:0043565
Stsc241863g00001 357 MobiDBLite consensus disorder prediction 229 260 - -
Stsc241863g00001 357 Pfam GATA zinc finger 267 300 IPR000679 GO:0006355|GO:0043565
Stsc241863g00001 357 PANTHER GATA TRANSCRIPTION FACTOR 13 333 - -
Stsc241863g00001 357 FunFam GATA transcription factor 256 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241863g00001 Stsc-Chr241863 2310 5280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241863g00001 19 331 C2C2-Gata Transcription Factor Family AT4G32890 35.404 1.44e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc241863g00001 GATA 6.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241863g00001 - - gmx:100815693 411.764