Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241861g00008 ATGGAATCTAAGAAGAGGAACAGTTCTTCCAATAATAATAGCCAGAACTACCAACAACAACAAGAACAATTTGAATTGGAAGAGGTACTTGAACAGGAACAAGAACAAGATGAAGCATGTTATCAAGATCAAGAAGAAGAAGAGGAGGAGGAAGAAGATGAAGAAAATAATGAGATCCTCAAGAGAAGAATCTCTAACCACCCTCTCTATGGACTCTTGGTTGAAGCTCACTTGGAGTGTTTGAAGGTTGGTGACATATCCAACTTAGAAAGACAGCTGAAGATGGATCCAATTCAAGCAATGAAGCAACAAAACTTGAACATGTTCAGCCAGTCAGAGCTTGATCTCTTCATGGAAGCATATTGCTTGGCACTTGGGAAGCTGAAAGAAGCAATGGAGGAACCAAAACAGAAGTCAATGGCTTTCATAAACAACATGCATTCCCAACTCAAGGAGCTCAGCACCAAAGCCACCGCCATGCCTCCTCCTTCTGAAGCTTCTGCTGCATCTTCAAGTAGTGAGAGCAAGTTCAGAAGAAACCCTAATATCTAG 552 0.4149 MESKKRNSSSNNNSQNYQQQQEQFELEEVLEQEQEQDEACYQDQEEEEEEEEDEENNEILKRRISNHPLYGLLVEAHLECLKVGDISNLERQLKMDPIQAMKQQNLNMFSQSELDLFMEAYCLALGKLKEAMEEPKQKSMAFINNMHSQLKELSTKATAMPPPSEASAASSSSESKFRRNPNI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241861g00008 183 Coils Coil 30 63 - -
Stsc241861g00008 183 SMART KNOX1_2 58 98 IPR005540 GO:0003677|GO:0005634
Stsc241861g00008 183 MobiDBLite consensus disorder prediction 1 58 - -
Stsc241861g00008 183 MobiDBLite consensus disorder prediction 26 55 - -
Stsc241861g00008 183 Pfam KNOX2 domain 111 153 IPR005541 GO:0003677|GO:0005634
Stsc241861g00008 183 Pfam KNOX1 domain 60 84 IPR005540 GO:0003677|GO:0005634
Stsc241861g00008 183 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 31 157 - -
Stsc241861g00008 183 MobiDBLite consensus disorder prediction 153 183 - -
Stsc241861g00008 183 SMART KNOX2_2 104 155 IPR005541 GO:0003677|GO:0005634
Stsc241861g00008 183 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241861g00008 Stsc-Chr241861 53919 57993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241861g00008 39 153 Homeobox Transcription Factor Family AT4G08150 34.426 2.26e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241861g00008 - - gmx:100790124 194.512