Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241861g00003 ATGGTTGACGATTCCTCCACCGACGACAGTTCCACCAACAGCAGCTTCGTTGTTTGGAACCCGCCGGAGTTCCCGCGGCTTCTTCTTCCTACCTATTTCAAGCATAACAACTTTTCTAGCTTCATCCGCCAGCTTAATACCTATTCTTTTTACCTGTACAAGGAAGCAAAGACAGTGTGCCGCTCGTTTAGTGCTGGACACCTTGATGATGATGATGATTGTGAGAGGAATAGCAAAAGAAACCTCTTCAAGTGTAAGCTTGGTAAACTGAGTAATGTTGGTGAAGCTTTGGACTTGTTTCATTCTATGGCTATGATGAAGCCTTTACCATCTGTGGTTGACTTCACTTTGTTGTTGGGTGCGATTGTGAGGATGAAGCATTACACAACTGCAATATCTTTGGTTCAATACATGTACTCTTCTTTGGGAATAAAAGTTGATTACTTTACTCTTAATATTGTGATTAATTGCCTTTGTCGATTAAAATTGACGCCTTTCGGGTTCTCAGTCTTTGGGAACATGTTAAAGCTTGGTTTGGATCCCCCTCTTTCTACATTCACTACTCTCATTAATGGGCTTTGCATGCAAGGCGATGTGACTCGGGCAGTGGGGATGGTTGAAAGGTTGGAAAAGATGGGTTATCAATTAGATGTTTACACTTTTGGGGTGTTGATTAATGGATTGTGCAAGGTAGGTGAGACTTATGCGGCTATTAGGTGGCTACATAAGATGGAAGAAAGAAATTGTAGATCAAATGTTGTAGTTTACAGCACAATTATTGATAGTTTGTGCAAGGATGGATTGGTGTCTGATGCTTTACATTTGTTCTCAGAAATGTGCAGTAAGGGTATTCAACCAAATATTATTACATACAGTTGTTTGATCCAAGGTCTTTGCAATTTTGGCAGATGGAAGGAGGCTACTTCCCTCCTGGATGAGATGATGAAAGTGAGGATGATGCCAGATTTGCAAACACTAAACATTTTAGTGGATGCTTTCTGCAAAGAAGGAGAAGTTATGCCGGCTAAGAGTGCAATTGGGTTTATGATTCTGATGGGCGAGCAGCCAGATGCCTTTACCTATAATGCATTGATTGATAGGTATTGTTTGCAAAAGGAAATGAACAAGGCCATGGAAGTATTTAACTTAATGGTTACTAGGGCCTGTTTACCTGACATTGTAACTTATACTTCACTTATCCATGGATGGTGTATGATTAAAAACATAAATAAGGCTATGCATCTTTTGACTGAAATGGTCAATGCAGGATTCGTTCCTGATGTTGTCACTTGGACCACTCTTATCGGTGGGTTTTGTCGAGTCGGCCGACCATTGGCTGCAAAGGAACTCTTCTTTAGTATGCACAAACATGGTCAGATGCCCAATCTCCAGACTTGTGCTGTTTTGTTGGATGGTCTATGCAAATGCCAACTTCTTTCTGAGGCAACATTGGTGTTTGAATTATTAGAGAAGAGTGGTTTGGATCTTAACATTGTGATTTATAATATTTTGCTTCATGGAATGTGGACTGCTGGAAAAGTAAACTCTGCATGGGAACTTTTTTCTTCCTTGCCTGCTAAAGGTCTGCAAATTAATTTGTATACTTATAACATTATGGTTAAAGGTCTCTGTAAACAAGGTCTAATAGATGAAGCCGAAGACTTACTAACGAACATGGAAGAGAATGGCTGCCCACCAAACAACTGCACTTACAATGTCTTTGTCCAAGGGTTACTAATTAAAAAGGATTCTTTAAGGTCCATGAAATACCTTAAAACAATGACAGACAAAGGCTTTTCAGTAGATGCTACCACCACAGAAGTGATTATCAATTACCTATCCACCAATCAAAAAGACACTGCATTTCGAGAATTTTTGTTCCCAAAAGGATGA 1893 0.3983 MVDDSSTDDSSTNSSFVVWNPPEFPRLLLPTYFKHNNFSSFIRQLNTYSFYLYKEAKTVCRSFSAGHLDDDDDCERNSKRNLFKCKLGKLSNVGEALDLFHSMAMMKPLPSVVDFTLLLGAIVRMKHYTTAISLVQYMYSSLGIKVDYFTLNIVINCLCRLKLTPFGFSVFGNMLKLGLDPPLSTFTTLINGLCMQGDVTRAVGMVERLEKMGYQLDVYTFGVLINGLCKVGETYAAIRWLHKMEERNCRSNVVVYSTIIDSLCKDGLVSDALHLFSEMCSKGIQPNIITYSCLIQGLCNFGRWKEATSLLDEMMKVRMMPDLQTLNILVDAFCKEGEVMPAKSAIGFMILMGEQPDAFTYNALIDRYCLQKEMNKAMEVFNLMVTRACLPDIVTYTSLIHGWCMIKNINKAMHLLTEMVNAGFVPDVVTWTTLIGGFCRVGRPLAAKELFFSMHKHGQMPNLQTCAVLLDGLCKCQLLSEATLVFELLEKSGLDLNIVIYNILLHGMWTAGKVNSAWELFSSLPAKGLQINLYTYNIMVKGLCKQGLIDEAEDLLTNMEENGCPPNNCTYNVFVQGLLIKKDSLRSMKYLKTMTDKGFSVDATTTEVIINYLSTNQKDTAFREFLFPKG 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241861g00003 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Stsc241861g00003 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Stsc241861g00003 630 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 347 508 - -
Stsc241861g00003 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Stsc241861g00003 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Stsc241861g00003 630 PRINTS Heat shock factor (HSF) domain signature 41 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241861g00003 630 PRINTS Heat shock factor (HSF) domain signature 28 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241861g00003 630 Gene3D - 1 81 IPR036388 -
Stsc241861g00003 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Stsc241861g00003 630 SMART hsfneu3 1 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241861g00003 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Stsc241861g00003 630 Gene3D Tetratricopeptide repeat domain 513 625 IPR011990 GO:0005515
Stsc241861g00003 630 Gene3D Tetratricopeptide repeat domain 423 512 IPR011990 GO:0005515
Stsc241861g00003 630 Gene3D Tetratricopeptide repeat domain 82 194 IPR011990 GO:0005515
Stsc241861g00003 630 SUPERFAMILY "Winged helix" DNA-binding domain 1 57 IPR036390 -
Stsc241861g00003 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Stsc241861g00003 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Stsc241861g00003 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Stsc241861g00003 630 Pfam HSF-type DNA-binding 11 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc241861g00003 630 NCBIfam pentatricopeptide repeat 429 462 IPR002885 -
Stsc241861g00003 630 NCBIfam pentatricopeptide repeat 219 252 IPR002885 -
Stsc241861g00003 630 NCBIfam pentatricopeptide repeat 254 288 IPR002885 -
Stsc241861g00003 630 NCBIfam pentatricopeptide repeat 394 428 IPR002885 -
Stsc241861g00003 630 NCBIfam pentatricopeptide repeat 534 567 IPR002885 -
Stsc241861g00003 630 NCBIfam pentatricopeptide repeat 359 393 IPR002885 -
Stsc241861g00003 630 NCBIfam pentatricopeptide repeat 289 322 IPR002885 -
Stsc241861g00003 630 NCBIfam pentatricopeptide repeat 185 217 IPR002885 -
Stsc241861g00003 630 Pfam PPR repeat family 184 230 IPR002885 -
Stsc241861g00003 630 Pfam PPR repeat family 356 404 IPR002885 -
Stsc241861g00003 630 Pfam PPR repeat family 497 545 IPR002885 -
Stsc241861g00003 630 Pfam PPR repeat family 252 300 IPR002885 -
Stsc241861g00003 630 Pfam PPR repeat family 426 475 IPR002885 -
Stsc241861g00003 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Stsc241861g00003 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Stsc241861g00003 630 Pfam PPR repeat 325 350 IPR002885 -
Stsc241861g00003 630 Pfam PPR repeat 149 179 IPR002885 -
Stsc241861g00003 630 Gene3D Tetratricopeptide repeat domain 347 422 IPR011990 GO:0005515
Stsc241861g00003 630 Gene3D Tetratricopeptide repeat domain 205 280 IPR011990 GO:0005515
Stsc241861g00003 630 Gene3D Tetratricopeptide repeat domain 281 346 IPR011990 GO:0005515
Stsc241861g00003 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241861g00003 Stsc-Chr241861 16932 20366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241861g00003 170 624 Glycosyltransferase AT1G05670 28.571 6.66e-66 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc241861g00003 PPR_2 5.2e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241861g00003 - - gmx:100777512 833.558