Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241861g00001 ATGAGCGTGCAAGCTCAGAGGGACCGGAGGAGTAGGTCCAGGGTTCCGCCGCAAGGTGGTCCACGTCAAGAATGGGTCCCCAGAGGATCATCTACCACTGCTGCTGCTGCTGCTGTTCAACCATCAAATTTGCAACCTGATCAAAATGCTGAATCTGTTGGCAGTTCAAGTAATGGTGCTGTTGTTGCTGCAGCCACCCCTGTTCCCACTGCCCCGCCTGCGGTGGTGCGCCATAATAGGAGCAATCAGGGGCCTGTGAATCAGAGAAGGGAAATGGAGAAAGGGAGGAGTAGTGGAAATCAGGCTGGGAAGGGGTCGAGATTGAGGGACTCTAGTTTGCCTCAGTTGGTGCAGGAGATTCAGGAGAAGCTCATGAAAGGGACTGTTGAATGCATGATTTGTTACGACATGGTGCGGAGGTCTGCCCCTGTTTGGTCTTGTTCGAGCTGCTACTCTATCTTTCACCTCAATTGCATCAAAAAGTGGGCTCGTGCGCCTACGTCAATTGATTTGTCGGCTGAGAAGAATCAGGGGTTTAATTGGCGGTGTCCTGGTTGTCAATCGGTGCAGCTCACTTCATCAAAGGAGATTCGGTATGTTTGCTTTTGTGGGAAGAGGGTGGACCCGCCATCAGATTTGTATTTGACGCCACATTCGTGTGGAGAACCATGTGGGAAGCCTCTTGAGAGGGAGGTCCTTGTCCTCCTTGTAAAGCATTTGCCCCTCCACGCTTATGTCCCTGTGAGAAGAAAACAATTACCACACGATGTTCTGATCGGCAATCTGTTCTTACATGTGGCCAGCGGTGTGAGAAGCTTCTCGAGTGTGGGCGTCACCGATGTGAACGCATTTGTCACGTGGGAGCTTGTGATCCATGAAAAGCTGGAGTTTTCTCTTGTGGTTCCAATTGTGGGAGGAAACTTAGTTGTGAAGTGCCGTTGTGGTTCAACTTCTCGCACTGTGGAATGCTATAGGACAACGGACAATGAGAAGTTTACTTGTGAAAAGCCTTGTGGAAGAAAAAAGAATTGTGGAAGACATCGGTGTAGTGAACGGTGTTGTCCACTTTCTAATCCCAACAACAATTTCAGCGGGGAATGGGATCCACACTTTTGTTCGATGCCATGTGAAAAGAAGTTAAGATGTGGCCAGCATGCTTGTGAATCATTATGTCACAGTGGCCATTGCCCACCTTGTCTTGAAACCATCTTTACAGACCTGACATGTGCTTGTGGTAGGACTTCAATCCCACCTCCACTGCCTTGTGGTACACCGCCTCCTTCATGTCAGCTCCCATGTTCAGTTCCTCAGCCTTGTGGCCATATAGCCTCGCACAGTTGCCACTTTGGAGACTGCCCTCCTTGTTCAGTTCCTGTAGCAAAAGAATGTATTGGCGGCCATGTTGTTCTCAGGAACATTCCTTGTGGTTCAAAGGACATTAGATGCAATACGCTATGTGGGAAGACGAGACAATGTGGTTTACATGCATGTGGGAGAACCTGTCACCCCCCTCCTTGTGATAATCTATCTTGCAGTGTGCAAGGCTTACCAGCGCCTTGTGGCCAAACATGTGGAGCTCCTAGAAGAGACTGTCGACATACATGTACAGCTCCGTGTCACCCGTCCTCTCCATGCCCGGATGTAAGATGTGAGTTCCCTGTTACAATTACCTGTTGTTGTGGCCGTATAACTGCAAGTGTTCCATGTGATGCTGGTGGCAGCAGTAGTAATTATAATGCTGATGCTGTACATGAAGCTTCCATCACTCAAAAGTTGCCCATCGCACTACAACCAGTTGATCCGAGTGGCAAGAAGGTTCCTCTTGGACAAAGAAAGCTGATGTGTGATGATGAATGTGCTAAGTTAGAGCGCAAGAGGGAGAAAAGGGATGCAGTTAGGGTAATTGCAGAGAGATGGAAGCTTGCTGTGAGTGCTGCTGGTTGGGAGCCGAAGCGTTTTATAGTAGTTCATGTTACCCCAAAGTCGAAAGCCCCAATCCGTGTGCTAGGAGTTAAGGGTACTCCAACTATAAGCGCACCTCTGCCTCCTGCATTTGATCCCTTGGTAGACATGGACCCTAGGCTTGTTGTATCATTTCCAGACTTACCACGGGAGGCTGATATTAGTGCTTTGGTGCTGAGATTTGGTGGTGAGTGTGAGCTTGTTTGGCTGAATGACAAAAATGCCTTGGCTGTTTTTCATGACCCTGCTCGAGCTGCAACGGCAATGAGGAGGTTAGATCATGGTACATTTTATCAGGGAGCTGTTTCAGTTGTCCCCAATGTTGGGGCAGCTGCCACTTCTTCAACTACAAGTGCCTGGGGAGGAGGGACAATGAAAGAAGGAGCACTATCTGCATTAAAAGGTAATGCATGGAAGAAAGCTGTGGTTCAAGAGTCCGGGTGGAGAGAAGATTCTTGGGGCGATGAAGAATGGACTACTGGATCTGCCAATGTCCAGCAATCTGCATGGAAGAAAGAAGCACCAATAGCTGCTTCTTTTAACCGTTGGAATGTATTAGACCATGAAACAGGTTCAAGTTCATCTTCTACAAATGTGAAAAAAACTCAAGTTTCTGTGAAAAACACTGAAAGCAGTGCTGTCTTGAGGTTGGAGTCTCAAGCAAGTGGCTCAAATGAACAAGGGAGACATGGTGGGAACTTGGATGCAGCTGAATCTTCTGAAGTAGTAGATGATTGGGAGAAGGCTTATGAATGA 2718 0.482 MSVQAQRDRRSRSRVPPQGGPRQEWVPRGSSTTAAAAAVQPSNLQPDQNAESVGSSSNGAVVAAATPVPTAPPAVVRHNRSNQGPVNQRREMEKGRSSGNQAGKGSRLRDSSLPQLVQEIQEKLMKGTVECMICYDMVRRSAPVWSCSSCYSIFHLNCIKKWARAPTSIDLSAEKNQGFNWRCPGCQSVQLTSSKEIRYVCFCGKRVDPPSDLYLTPHSCGEPCGKPLEREVLVLLVKHLPLHAYVPVRRKQLPHDVLIGNLFLHVASGVRSFSSVGVTDVNAFVTWELVIHEKLEFSLVVPIVGGNLVVKCRCGSTSRTVECYRTTDNEKFTCEKPCGRKKNCGRHRCSERCCPLSNPNNNFSGEWDPHFCSMPCEKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHIASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNTLCGKTRQCGLHACGRTCHPPPCDNLSCSVQGLPAPCGQTCGAPRRDCRHTCTAPCHPSSPCPDVRCEFPVTITCCCGRITASVPCDAGGSSSNYNADAVHEASITQKLPIALQPVDPSGKKVPLGQRKLMCDDECAKLERKREKRDAVRVIAERWKLAVSAAGWEPKRFIVVHVTPKSKAPIRVLGVKGTPTISAPLPPAFDPLVDMDPRLVVSFPDLPREADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTFYQGAVSVVPNVGAAATSSTTSAWGGGTMKEGALSALKGNAWKKAVVQESGWREDSWGDEEWTTGSANVQQSAWKKEAPIAASFNRWNVLDHETGSSSSSTNVKKTQVSVKNTESSAVLRLESQASGSNEQGRHGGNLDAAESSEVVDDWEKAYE 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241861g00001 905 CDD NF-X1-zinc-finger 372 415 - -
Stsc241861g00001 905 MobiDBLite consensus disorder prediction 1 113 - -
Stsc241861g00001 905 CDD RING-CH-C4HC3_NFX1-like 130 187 - -
Stsc241861g00001 905 CDD NF-X1-zinc-finger 334 393 - -
Stsc241861g00001 905 CDD NF-X1-zinc-finger 482 540 - -
Stsc241861g00001 905 MobiDBLite consensus disorder prediction 802 823 - -
Stsc241861g00001 905 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 309 626 IPR034078 GO:0003700
Stsc241861g00001 905 MobiDBLite consensus disorder prediction 842 905 - -
Stsc241861g00001 905 CDD NF-X1-zinc-finger 520 569 - -
Stsc241861g00001 905 MobiDBLite consensus disorder prediction 842 883 - -
Stsc241861g00001 905 MobiDBLite consensus disorder prediction 25 63 - -
Stsc241861g00001 905 SUPERFAMILY RING/U-box 121 190 - -
Stsc241861g00001 905 MobiDBLite consensus disorder prediction 99 113 - -
Stsc241861g00001 905 SMART znfxneu3 382 401 IPR000967 GO:0005634|GO:0008270
Stsc241861g00001 905 SMART znfxneu3 439 457 IPR000967 GO:0005634|GO:0008270
Stsc241861g00001 905 SMART znfxneu3 492 513 IPR000967 GO:0005634|GO:0008270
Stsc241861g00001 905 SMART znfxneu3 344 378 IPR000967 GO:0005634|GO:0008270
Stsc241861g00001 905 SMART znfxneu3 531 552 IPR000967 GO:0005634|GO:0008270
Stsc241861g00001 905 CDD NF-X1-zinc-finger 429 477 - -
Stsc241861g00001 905 ProSiteProfiles Zinc finger RING-type profile. 131 187 IPR001841 -
Stsc241861g00001 905 ProSiteProfiles Zinc finger PHD-type profile. 128 189 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241861g00001 Stsc-Chr241861 5674 9036 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Stsc241861g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241861g00001 K12236 - gmx:106799700 899.427