Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241857g00012 ATGATGATTCAAGATGCAGTGGCCATAGATTGTGAAATGGTTGGCGTTGGTCAAGGAAACAAAAGTGCACTGGGAAGAGTAACAATGGTTAATAAGTGGGGAAATGTTCTTTATGATGAGTTTGTTCGGCCAGTAGAACGGGTTGTTGACTTCCGTACTAAAATTAGTGGCATAAGACCTCGAGATTTGAAAAAAGCGGTTGACTTTTGGACGGCTCAGAAGAAAGTGGCAGAGTTGATGAAAGGAAGGATCCTTGTTGGTCATGCCTTGCAGAATGATCTCAAGGCGTTGTTATTAAGTCATCCAAAAAAGGACATCCGAGATACCTCCGAGTACCAGCCATTTCTAAAGTCAGGTTGTAGAAGAGCGCTACGGCATCTTGCTGCAGAAATTCTTGGTGCCAAGATCCAATCAGGAGAGCATTGCCCTATACAAGATGCTCGTGCTGCTATGCTGCTTTACCAAAGAAATAGAAAAGAGTGGGAAAGGAGCTTAAAAGATCAGTTTAGGCTCAAAAAGAAGCAAAATAAAGGGAAGAAGAAAAAGAAGCTAAAGAATGAAGATACTTCAAATGCCAACCATGCTATAATTGAATCATAG 600 0.4133 MMIQDAVAIDCEMVGVGQGNKSALGRVTMVNKWGNVLYDEFVRPVERVVDFRTKISGIRPRDLKKAVDFWTAQKKVAELMKGRILVGHALQNDLKALLLSHPKKDIRDTSEYQPFLKSGCRRALRHLAAEILGAKIQSGEHCPIQDARAAMLLYQRNRKEWERSLKDQFRLKKKQNKGKKKKKLKNEDTSNANHAIIES 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241857g00012 199 SUPERFAMILY Ribonuclease H-like 6 161 IPR012337 -
Stsc241857g00012 199 CDD REX4_like 7 155 IPR037431 GO:0006364|GO:0008408
Stsc241857g00012 199 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 5 174 IPR047021 GO:0004527
Stsc241857g00012 199 SMART exoiiiendus 5 163 IPR013520 -
Stsc241857g00012 199 MobiDBLite consensus disorder prediction 172 199 - -
Stsc241857g00012 199 Coils Coil 144 164 - -
Stsc241857g00012 199 Pfam Exonuclease 7 154 IPR013520 -
Stsc241857g00012 199 Gene3D - 3 182 IPR036397 GO:0003676
Stsc241857g00012 199 FunFam Interferon-stimulated exonuclease gene 20 2 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241857g00012 Stsc-Chr241857 64585 68600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241857g00012 6 164 C2H2 Transcription Factor Family AT5G40310 36.000 1.49e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241857g00012 K18327 - gmx:100819122 324.709