Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241857g00011 ATGGTGGCCGCCGGCGAACCCATGAAGAACAAACCCAAGCAAAACCAACTCAACCCTAATTGGGTTCAACTCCAACAAAAGCTAAAGCTCAATAGCTCTAAGTCTTCAAGGACCACCAAAGAAGAAGACACCCCAAAATCAATACTGGGGAAACGTAAAGAGAGGCTGGACGATGAATCCATTGACCCTCAGATTGATCCTCTTATTCCTGTAAATGATGATTCAAGTCTGACAGATGCAGTGGCCATAGATTGTGAAATGGTTGGCGTTGGTCAAGGAAACAAAAGTGCACTGGGAAGAGTAACAATGGTTAATAAGTGGGGAAATGTTCTTTATGATGAGTTTGTTCGGCCAGTAGAACGGGTTGTTGACTTCCGTACTAAAATTAGTGGCATAAGACCTCGAGATTTGAAAAAAGCGGTTGACTTTTGGACGGCTCAGAAGAAAGTGGCAGAGTTGATGAAAGGAAGGATCCTTGTTGGTCATGCCTTGCAGAATGATCTCAAGGCGTTGTTATTAAGTCATCCAAAAAAGGACATCCGAGATACCTCCGAGTACCAGCCATTTCTAAAGTCAGGTTGTAGAAGAGCGCTACGGCATCTTGCTGCAGAAATTCTTGGTGCCAAGATCCAATCAGGAGAGCATTGCCCTATACAAGATGCTCGTGCTGCTATGCTGCTTTACCAAAGAAATAGAAAAGAGTGGGAAAGGAGCTTAAAAGATCAGTTTAGGCTCAAAAAGAAGCAAAATAAAGGGAAGAAGAAAAAGAAGCTAAAGAATGAAGATACTTCAAATGCCAACCATGCTATAATTGAATCATAG 822 0.4246 MVAAGEPMKNKPKQNQLNPNWVQLQQKLKLNSSKSSRTTKEEDTPKSILGKRKERLDDESIDPQIDPLIPVNDDSSLTDAVAIDCEMVGVGQGNKSALGRVTMVNKWGNVLYDEFVRPVERVVDFRTKISGIRPRDLKKAVDFWTAQKKVAELMKGRILVGHALQNDLKALLLSHPKKDIRDTSEYQPFLKSGCRRALRHLAAEILGAKIQSGEHCPIQDARAAMLLYQRNRKEWERSLKDQFRLKKKQNKGKKKKKLKNEDTSNANHAIIES 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241857g00011 273 MobiDBLite consensus disorder prediction 1 69 - -
Stsc241857g00011 273 Pfam Exonuclease 81 228 IPR013520 -
Stsc241857g00011 273 SUPERFAMILY Ribonuclease H-like 80 235 IPR012337 -
Stsc241857g00011 273 Gene3D - 76 256 IPR036397 GO:0003676
Stsc241857g00011 273 FunFam Interferon-stimulated exonuclease gene 20 76 247 - -
Stsc241857g00011 273 Coils Coil 218 238 - -
Stsc241857g00011 273 CDD REX4_like 81 229 IPR037431 GO:0006364|GO:0008408
Stsc241857g00011 273 MobiDBLite consensus disorder prediction 34 62 - -
Stsc241857g00011 273 SMART exoiiiendus 79 237 IPR013520 -
Stsc241857g00011 273 MobiDBLite consensus disorder prediction 11 33 - -
Stsc241857g00011 273 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 31 247 IPR047021 GO:0004527
Stsc241857g00011 273 MobiDBLite consensus disorder prediction 246 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241857g00011 Stsc-Chr241857 64559 68652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241857g00011 80 238 C2H2 Transcription Factor Family AT5G40310 36.000 9.02e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241857g00011 K18327 - gmx:100819122 412.535