Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241857g00010 ATGGTGGCCGCCGGCGAACCCATGAAGAACAAACCCAAGCAAAACCAACTCAACCCTAATTGGGTTCAACTCCAACAAAAGCTAAAGCTCAATAGCTCTAAGTCTTCAAGGACCACCAAAGAAGAAGACACCCCAAAATCAATACTGGGGAAACGTAAAGAGAGGCTGGACGATGAATCCATTGACCCTCAGATTGATCCTCTTATTCCTGTAAATGATGATTCAAGTCTGACAGATGCAGTGGCCATAGATTGTGAAATGGTTGGCGTTGGTCAAGGAAACAAAAGTGCACTGGGAAGAGTAACAATGGTTAATAAGTGGGGAAATGTTCTTTATGATGAGTTTGTTCGGCCAGTAGAACGGGTTGTTGACTTCCGTACTAAAATTAGTGGCATAAGACCTCGAGATTTGAAAAAAGCGGTTGACTTTTGGACGGCTCAGAAGAAAGTGGCAGAGTTGATGAAAGGAAGGATCCTTGTTGGTCATGCCTTGCAGAATGATCTCAAGGCGTTGTTATTAAGTCATCCAAAAAAGGACATCCGAGATACCTCCGAGTACCAGCCATTTCTAAAGTGA 576 0.4358 MVAAGEPMKNKPKQNQLNPNWVQLQQKLKLNSSKSSRTTKEEDTPKSILGKRKERLDDESIDPQIDPLIPVNDDSSLTDAVAIDCEMVGVGQGNKSALGRVTMVNKWGNVLYDEFVRPVERVVDFRTKISGIRPRDLKKAVDFWTAQKKVAELMKGRILVGHALQNDLKALLLSHPKKDIRDTSEYQPFLK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241857g00010 191 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 31 189 IPR047021 GO:0004527
Stsc241857g00010 191 MobiDBLite consensus disorder prediction 1 69 - -
Stsc241857g00010 191 SUPERFAMILY Ribonuclease H-like 80 184 IPR012337 -
Stsc241857g00010 191 Pfam Exonuclease 81 164 IPR013520 -
Stsc241857g00010 191 MobiDBLite consensus disorder prediction 34 62 - -
Stsc241857g00010 191 CDD REX4_like 81 191 IPR037431 GO:0006364|GO:0008408
Stsc241857g00010 191 MobiDBLite consensus disorder prediction 11 33 - -
Stsc241857g00010 191 SMART exoiiiendus 79 191 IPR013520 -
Stsc241857g00010 191 Gene3D - 76 191 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241857g00010 Stsc-Chr241857 64559 68652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241857g00010 81 191 C2H2 Transcription Factor Family AT5G40310 37.302 2.55e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241857g00010 K18327 - gmx:100819122 301.982