Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241857g00008 ATGGATAAGATGATAGCTTCAGAGATGGATCAACATAGACAAGGTTATTTTCATTCGGAACCCAGTATCCTTCCAAGAGGCACGGGCATCTCGCATCCTAATATCCGTACAATTGTGGCAGCTTCCGGGAGCACAAGTAATCATGATCCCCACTATTTAACACCAGATGCTTATGACAATGGCGTATATGTGACACAGTATAACGGCGTTCAACCACAACATAATCGTAACATGGGTGTTGCAGCTACGCCAAATTTATATTATTCTGGCATGAACCCTTCTTCTAGTACTGGTGTATTCCCCATGCCTCTAAATCATAGAGGCTCTGATCAGTTGCCTGGTTCAGGCGCTTATGCGGTGTCCTTAGTTTCTTCGGATCATTTTGGAAGAAGCAGTAGCTTCGTGGATGATGCCAGAGGTCCATACAAGAGGAAAAGTGCTGAAGGGATGAGAGTAAATTACCAGTATTTTAATGCTCCGGCTAGTTCCTCAACTGCTCCCCCTAATGCCAGGCATGCTGACGGAGTTCCGGTGATGGATGCTGCGTCATTTCCTCTGCGTGTCCCTTCATTTGTGGAAGTAGGACCACATGGTAATGCATGGAGCAGATCAGGTGATTCCATTATGGTGCATGATCATAACCATTTGATTCGAGGAAACTACGTAGGGCAGCACTTTCAGCCGGCAGCACCTCCGTGGTTGGACCAGCAGTTGAATAGTAATAACAGCGATGGCCATACAACACCATGGAATCAGTCTCTTCCAATGCCTTATATGCATGCTCCAAATGTTAATGGAGGTTCAATAGAGAGTGCAAGTATGGGTTTGCCAAGGTATCACGAAACGGCGAGCAACAGAAATGGTCTCAGGTTTCCTCACCCCCCTCCGGTCAATCACCAGCACCATAATTATCATCATCCGGCACTGCCTATGCAAGGAGTAAGAGGTCATGGTGTTAACTTCCATCCTCCTGTAACCGCAGCTTCATTCAGAGTTCCAACAAATCCCTCACGCGGTGCTGCCATCCCCACGCCTAATGGTTTCGAGATGGCCCCTAGGCATGTTGGCCCTGTGCCATCAGGAGGCCTACGCATTTACCGACCTCATAGGGGAGTCATGCATGAAACTATCAGTCATCGAAATCTCCCCCCTATGGGTTTTCTTCATGTTGATGATGTTGCTTTAATCGATGAGGTGGGAAATTTGGTTGACCATCACCGAGACATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTTCTTGCATTGGGTGAGCGGATCGGCAATGTAAGCACTGGTTTATCAGAAGAAACAATCGCGATTCAATTGAAGACAAAAACATATTCAAAACCAGTTTCTGCTACTATTTCAGATGAGGCAACCCCGGAAGACCGGGAAGCTGATTCTTGCATTATATGCCAGGATGAATACAAGAACAAAGAGAAGATCGGAGTTCTCCGATGCGAGCACGAGTACCATGCGGATTGCTTGAGGAAGTGGTTGATTGTGAAGAATGTCTGCCCAATATGCAAATCAGAAGCATTGACTCCTGGAGGGAAGGATGTATAG 1572 0.4663 MDKMIASEMDQHRQGYFHSEPSILPRGTGISHPNIRTIVAASGSTSNHDPHYLTPDAYDNGVYVTQYNGVQPQHNRNMGVAATPNLYYSGMNPSSSTGVFPMPLNHRGSDQLPGSGAYAVSLVSSDHFGRSSSFVDDARGPYKRKSAEGMRVNYQYFNAPASSSTAPPNARHADGVPVMDAASFPLRVPSFVEVGPHGNAWSRSGDSIMVHDHNHLIRGNYVGQHFQPAAPPWLDQQLNSNNSDGHTTPWNQSLPMPYMHAPNVNGGSIESASMGLPRYHETASNRNGLRFPHPPPVNHQHHNYHHPALPMQGVRGHGVNFHPPVTAASFRVPTNPSRGAAIPTPNGFEMAPRHVGPVPSGGLRIYRPHRGVMHETISHRNLPPMGFLHVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETIAIQLKTKTYSKPVSATISDEATPEDREADSCIICQDEYKNKEKIGVLRCEHEYHADCLRKWLIVKNVCPICKSEALTPGGKDV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241857g00008 523 Pfam Ring finger domain 469 512 IPR001841 -
Stsc241857g00008 523 SUPERFAMILY RING/U-box 461 517 - -
Stsc241857g00008 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 516 IPR013083 -
Stsc241857g00008 523 ProSiteProfiles Zinc finger RING-type profile. 471 512 IPR001841 -
Stsc241857g00008 523 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 102 516 IPR045191 GO:0061630
Stsc241857g00008 523 SMART ring_2 471 511 IPR001841 -
Stsc241857g00008 523 CDD RING-H2_RNF24-like 469 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241857g00008 Stsc-Chr241857 51206 55172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241857g00008 364 516 C3H Transcription Factor Family AT2G15530 43.871 5.28e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241857g00008 K19041 - gmx:100800642 677.552