Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241857g00003 ATGGATGAGTTCCTAGACTTCTCGTCGTCGCGGCGGGGCGCGCACCGCCGCTCCTCAAGCGACTCCGTGGCGTTCTTGGAGTCTCCGATGTTCTTTGACAGGCTGGACGATGACCAGCTCATGTCGATGTTCTCCGACGATGTTGCTGCCGTGGCGATGCCGCATCCGCCGCCGCTGTCGTCAGCATCCGATCCGTCGTCGCCGTCGTCGGACCAGACGAGTAACAACGACGAGAAGCCAGCGGGAATGGCGATGGACATTGCACCACCGTTAATGCAGGAAAACAATAACGATAATCACGTGATGAAGCTTAAGAATGAAGCGGTTGAGGAGGAAAGCTTCGGCAAGAATGAGGAGGCGGCGGCGCCGTCCTCCGCCGCCACCGGCAGCATTGAGACCATCGTTGATCCCAAGAGAGTCAAAAGAATTTTGGCTAACCGGCAATCGGCTCAGAGGTCAAGGGTGAGAAAGCTACAATACATTTCTGAACTTGAAAGGAGTGTAACAACTTTGCAGACGGAGGTATCAGCATTGTCACCAAGGGTAGCGTTTTTGGACCACCAACGTTTGATTCTGAATGTGGACAACAGTGCATTGAAGCAACGCATTGCTGCTTTGGCTCAAGACAAGATTTTCAAAGATGCTCATCAAGAAGCACTGAAGAAGGAAATCGAAAGACTTAGACAAATCTATCACCAGCAACAGAACAACAACAACAACAATAATAATGGGCATTCATCTCTTCATGCTCCAACAATGGCATGTAATAATAATAATGACAATAATAAGGAGCAGCTCCTGAGTTGA 807 0.5006 MDEFLDFSSSRRGAHRRSSSDSVAFLESPMFFDRLDDDQLMSMFSDDVAAVAMPHPPPLSSASDPSSPSSDQTSNNDEKPAGMAMDIAPPLMQENNNDNHVMKLKNEAVEEESFGKNEEAAAPSSAATGSIETIVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQIYHQQQNNNNNNNNGHSSLHAPTMACNNNNDNNKEQLLS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241857g00003 268 Pfam bZIP transcription factor 138 182 IPR004827 GO:0003700|GO:0006355
Stsc241857g00003 268 CDD bZIP_plant_RF2 139 189 IPR044759 GO:0003700|GO:0006355
Stsc241857g00003 268 Coils Coil 92 112 - -
Stsc241857g00003 268 MobiDBLite consensus disorder prediction 64 79 - -
Stsc241857g00003 268 SMART brlzneu 134 198 IPR004827 GO:0003700|GO:0006355
Stsc241857g00003 268 SUPERFAMILY Leucine zipper domain 138 192 IPR046347 GO:0003700|GO:0006355
Stsc241857g00003 268 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 141 156 IPR004827 GO:0003700|GO:0006355
Stsc241857g00003 268 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 136 188 IPR004827 GO:0003700|GO:0006355
Stsc241857g00003 268 MobiDBLite consensus disorder prediction 109 129 - -
Stsc241857g00003 268 Gene3D - 137 236 - -
Stsc241857g00003 268 MobiDBLite consensus disorder prediction 235 268 - -
Stsc241857g00003 268 MobiDBLite consensus disorder prediction 49 83 - -
Stsc241857g00003 268 MobiDBLite consensus disorder prediction 1 18 - -
Stsc241857g00003 268 MobiDBLite consensus disorder prediction 1 23 - -
Stsc241857g00003 268 PANTHER BASIC LEUCINE ZIPPER 34 1 254 - -
Stsc241857g00003 268 FunFam Basic leucine zipper 61 137 210 - -
Stsc241857g00003 268 Coils Coil 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241857g00003 Stsc-Chr241857 23500 26592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241857g00003 1 215 bZIP Transcription Factor Family AT3G58120 54.508 1.70e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc241857g00003 bZIP_1 6e-10 CL0018