Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241856g00023 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCACCACAAGAAGGGGAAAAGCGAGTTCTGGATTCTGAACTTTGGCATGCATGTGCTGGTCCCCTTGTTTCTTTACCTGCAGTTGGGAGCCGTGTGGTGTATTTTCCACAAGGTCACAGTGAACAGGTGGCAGTGTCAACTAATAAGGAAGTGGATGCTCATATCCCTAACTATCCAAGCTTGCCACCTCAACTCATTTGCCAACTCCATAATCTTACTATGCATGCTGATGCTGAGACAGATGAAGTGTATGCACAGATGACCTTGCAACCTTTGAATCCTCAAGAGCAAAAAGAGGCATATCTTCCAGCTGAGTTGGGAAGTCCAAGCAAACAGCCAACAAACTATTTCTGCAAAACTTTGACAGCCAGTGACACAAGCACCCATGGAGGATTCTCTGTTCCTCGCCGGGCAGCCGAAAAAGTGTTTCCTCCATTGGATTTCTCTCAACAGCCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTTCGAGGCCAGCCTAAAAGGCATCTACTCACAACAGGATGGAGTGTTTTTGTTAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGACAAGAACCAATTGCTTCTTGGCATCCGGCCTCATGCAGCTGCAACAAATAGTCGTTTCACTATATTCTATAATCCACGTGCTAGCCCCTCAGAATTTGTGATACCTTTGGCAAAGTATGTCAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGAATGTTGTTTGAAACTGAGGAGTCCAGTGTGAGGCGATATATGGGCACAATAACTGGCATTAGTGACTTGGATCCTGCAAGGTGGCCAAATTCACATTGGCGCTCTGTCAAGGTTGGCTGGGATGAATCCACTGCAGGAGAGAGGCAACCAAGGGTTTCTCTTTGGGAGATTGAGCCATTAACAACATTTCCTATGTATCCATCCCCATTTCCGCTTCGCCTTAAACGACCTTGGCCACCAGGACTACCCTCCTTCCATGGATTGAAGGATGAAGATTTTGGTATGAATTCTCCAATGATGTGGGTGAGAGAGCCAGATAGGGGTCTTCAGTCTCTAAATTTCCAGGGGATTGGAATTAGTCCTTGGATGCAGCCGAGATTTGATCCTTCCATGCTGAATATGCAAACAGACATGTATCAAGCTGTGGCTGCAGCAGCACTTCAGGATATGAGGACTTTAGATCCTTCAAAACAGCATTCTTCTTCCTTACTTCAATTTCAACAGCCACAGAACTTCCCAAACAGAACTGCTGCTTTAATGCATTCACAGATGTTGCAGCAATCACAACCTCAGCAAGCTTTCCAAATTAATCAAGAGAATCAGTCACAAAATCCAACACATGTTCAACAGCGTCCACAGCACCAGAACTCATTCAATAGCCAGCTCCATCATCACAACAACCAGCAACAGCAACAGCAACAGCAGCAGCAGCTGGTAGATAATCATCAGATTTCCAATGCCATGTCTACAATGTCTCAGTTTGTTTCAAGTTCAGCAACTCATCAACCTCAGTCACCACCTGTGCAAGCTATCTCCTCCTTGTGCCAACAGCAAAGCTTTTCGGATTCAAATGGGAACCCTGTTACCACTGCAAATGTTTCACCTCTGCATAGTATCTTGGGTTCCTTTCCTCAGGAGGAAGCATCTCAGCTATTGAACCTCCCTAGAAGTAGCTCATGGATTCCAGTTCAAACATCAGCAGCATGGCCCTCGAAGCGAGTCGCGGTGGATCCTCTCCTTTCCTCCGGGGCATCTCAGTGCATTCTGCCTCAGTTGGGGCAGCTGCAGAATACAATATCTCAAAATGTGGTTACATTGCCACCCTTCCCTGGTAGGGAGTGCACAATAGACCAAGAAGGAAGCACTGATCCACATAACCATCTTTTGTTTGGTGTTAATATAGAGCCCTCCACTCTCCTTGCCGCGGATTCTTCGTTGAGTGGTGGCATGACACACAGCATTGGTGAACCAGGCTTCTTGCAGCCCTCAGAAAGCATGGGGCTAGCTAACTCCCCAAACAAAACCTTTGTCAAGGTTTATAAGTCAGGGTCCTTCGGAAGATCAGTGGATATGAGTAAATTCAGCAGCTACCATGAGCTGAGGAGTGAACTAGCCCGAATGTTCGGGCTTGAAGGGGAGCTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGACGTTCTTCTCCTCGGGGATGGCCCATGGCCGGAATTCGTAAATAGTGTATGGTGCATCAAGATACTTTCACCTCAGGAAGTTCATCAAATGGGAAACTCCGGGCTGGAGCTGTTGAATTCAGTTCCTCTTGGTAACAGTATTTGTGATGATGACTATGGTAACCGACAAGACTCAAGAAGTTTAAGCACCGGGATAACATCGGTGGGCTCATTAGATTACTGA 2514 0.4626 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRPHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGLKDEDFGMNSPMMWVREPDRGLQSLNFQGIGISPWMQPRFDPSMLNMQTDMYQAVAAAALQDMRTLDPSKQHSSSLLQFQQPQNFPNRTAALMHSQMLQQSQPQQAFQINQENQSQNPTHVQQRPQHQNSFNSQLHHHNNQQQQQQQQQQLVDNHQISNAMSTMSQFVSSSATHQPQSPPVQAISSLCQQQSFSDSNGNPVTTANVSPLHSILGSFPQEEASQLLNLPRSSSWIPVQTSAAWPSKRVAVDPLLSSGASQCILPQLGQLQNTISQNVVTLPPFPGRECTIDQEGSTDPHNHLLFGVNIEPSTLLAADSSLSGGMTHSIGEPGFLQPSESMGLANSPNKTFVKVYKSGSFGRSVDMSKFSSYHELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVHQMGNSGLELLNSVPLGNSICDDDYGNRQDSRSLSTGITSVGSLDY 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241856g00023 837 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Stsc241856g00023 837 Pfam Auxin response factor 228 309 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc241856g00023 837 MobiDBLite consensus disorder prediction 471 511 - -
Stsc241856g00023 837 SUPERFAMILY DNA-binding pseudobarrel domain 112 233 IPR015300 -
Stsc241856g00023 837 ProSiteProfiles PB1 domain profile. 706 790 IPR000270 GO:0005515
Stsc241856g00023 837 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 795 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc241856g00023 837 Pfam AUX/IAA family 701 791 IPR033389 -
Stsc241856g00023 837 Gene3D - 264 336 - -
Stsc241856g00023 837 SMART B3_2 127 229 IPR003340 GO:0003677
Stsc241856g00023 837 FunFam Auxin response factor 701 795 - -
Stsc241856g00023 837 SUPERFAMILY CAD & PB1 domains 700 781 - -
Stsc241856g00023 837 FunFam Auxin response factor 125 229 - -
Stsc241856g00023 837 CDD B3_DNA 126 219 IPR003340 GO:0003677
Stsc241856g00023 837 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Stsc241856g00023 837 MobiDBLite consensus disorder prediction 524 561 - -
Stsc241856g00023 837 FunFam Auxin response factor 264 336 - -
Stsc241856g00023 837 Gene3D - 125 227 IPR015300 -
Stsc241856g00023 837 Gene3D - 702 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241856g00023 Stsc-Chr241856 67983 72134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241856g00023 1 456 B3 DNA Binding Superfamily AT1G30330 81.148 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc241856g00023 AUX_IAA 4.5e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241856g00023 - - gmx:100798719 1378.62