Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241856g00012 ATGTCAACGTCAACTCCTTTAACTAATCCTCCTTTCATTTGCAACGGTTTCCTTCTTCCCATTCTTGTATTACTACTACTACAGATTTCATCTCAGCTTGGACACTGTCGTACCATTGTTAAGTACCTTCCAGGGTTCCAGGGACCTCTTCCTTTTCTTCTTGAAACTGGGTATATAGGAGTAGGGGAAAATGATGACGTACAGACTTTTTACTACTTCATTGAATCAGAGAACAATCCAAGGGAGGATCCTCTCATGCTATGGCTCACTGGTGGCCCTGGCTGCTCTGCTTTCTCTGGTCTTGTCTATGAAATAGGACCACTTGAATTTCAAGTTGATGAATATGATGGGGGACTCCCTAATTTGGTGTATAGACCATACTCATGGACTAAGGCAAGTAGCATTGTATTTGTAGATATGCCTGTTAATACTGGCTTTTCATATGCTACAACAGAATTTGCTTCTCAACGGAGTGATTGGTTGTCAGTCAATCAAACCTATCAATTTTTTAGGAAGTGGTTAATGGATCATCCGGAATTTCTGAGAAACAAAGTTTACATCGGTGGTGACTCATACTCTGGTAAACTTGTTCCTGTAATTGCTGATGAAATTTCAAAAGGAAATGAACAAGGCCTACAACCATGGATAAATCTCCAGGGATACCTGATGGGGAATCCTGTAATAGATGGAAATTATGAGAACTATAGAATCCCATTTGCTCATGGGATGGGACTCATTTCTGATGAACTATACCAGTCACTGCTAAAACATTGTAAAGGAGAATACATAAATGTAGACATCAGAAATGTATTGTGTTCAAGATATCTCAAGTCCTTTGATGAGATGAAATCAGGTATTAATAACCCTCATATTTTGGAGCCAAAGTGTGAGTTTACCTCACCGAAGCCGTTGAAATCTTCTTGGAGGAGATCACTAACAGAAAACTATCCTTGGAAGTTAAATGACACTCATCTCAGATTACCATCCAGGAATTGTCGGACTTATGGATATCTCCTAAGTAGCTATTGGGCCAACGATGACAAAGTCCGCAATGCGCTTAATGTGCGAAAGGGAACTAAACGAGAATGGCGACGCTGCACCAAAGAGATGCCTTATGAGACGGATATCCCTAGCAGCCTTCCATATCAAGTAAATGTCAGCAAAAAAGGCTATCGTTCACTGATTTACAGTGGGGATCATGACATGGTCGTTCCTTTCTTGGACACTCAAGCACAGATAAGATCGTTAAACTACTCCATTGTCGATGATTGGAGGCCATGGAATACTAATGGCCAAGTAGCAGGATACACAAGGACTTACTCCAATGCAATGACATTTGCAACTGTCAAGGGTGCAGGGCACACAGCACCAGAGTACAAGCCTCAAGAATGCTTCCACATGTACACTAGTTGGATCTCTGAGAGGCCTTTTTAG 1434 0.4128 MSTSTPLTNPPFICNGFLLPILVLLLLQISSQLGHCRTIVKYLPGFQGPLPFLLETGYIGVGENDDVQTFYYFIESENNPREDPLMLWLTGGPGCSAFSGLVYEIGPLEFQVDEYDGGLPNLVYRPYSWTKASSIVFVDMPVNTGFSYATTEFASQRSDWLSVNQTYQFFRKWLMDHPEFLRNKVYIGGDSYSGKLVPVIADEISKGNEQGLQPWINLQGYLMGNPVIDGNYENYRIPFAHGMGLISDELYQSLLKHCKGEYINVDIRNVLCSRYLKSFDEMKSGINNPHILEPKCEFTSPKPLKSSWRRSLTENYPWKLNDTHLRLPSRNCRTYGYLLSSYWANDDKVRNALNVRKGTKREWRRCTKEMPYETDIPSSLPYQVNVSKKGYRSLIYSGDHDMVVPFLDTQAQIRSLNYSIVDDWRPWNTNGQVAGYTRTYSNAMTFATVKGAGHTAPEYKPQECFHMYTSWISERPF 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241856g00012 477 Gene3D - 332 477 - -
Stsc241856g00012 477 FunFam Serine carboxypeptidase-like 11 34 477 - -
Stsc241856g00012 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 198 IPR001563 GO:0004185|GO:0006508
Stsc241856g00012 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 137 IPR001563 GO:0004185|GO:0006508
Stsc241856g00012 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 148 IPR001563 GO:0004185|GO:0006508
Stsc241856g00012 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 444 457 IPR001563 GO:0004185|GO:0006508
Stsc241856g00012 477 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 461 IPR001563 GO:0004185|GO:0006508
Stsc241856g00012 477 SUPERFAMILY alpha/beta-Hydrolases 40 476 IPR029058 -
Stsc241856g00012 477 Gene3D alpha/beta hydrolase 35 305 IPR029058 -
Stsc241856g00012 477 FunFam Carboxypeptidase 331 476 - -
Stsc241856g00012 477 Pfam Serine carboxypeptidase 44 473 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241856g00012 Stsc-Chr241856 41814 45871 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241856g00012 38 63 Calmodulin-binding Proteins AT2G22960 73.077 1.06e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241856g00012 K16296 - gmx:100792006 661.373