Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241856g00011 ATGCACTCAATTAAACTTGGTGTGAGTGCATGTATGATAGTGATCAGGTACATAGGAGTGGGTGAAAATGAAGATGTGCAGGCTTTCTACTATTTCATTGAGTCAGAGAACAATCCTAAGGTGGATCCTCTCATGCTGTGGCTCACTGGTGGTCCTGGCTGCTCTGCTTTCTCTGGCCTTGTCTTTGAAATAGGTCCAATCACATTTAAAATTGAGGAATACAATGGGAGCCTGCCTAATTTGGTCTTGAGGCCACACTCATGGACAAAAGTAAGTAGCATTATATTTGTAGACTTGCCTGTAAACACAGGCTTCTCATATGCCACAACAGAATCTGCATCTCACAGGACTGATTGGTCATTAGTTTACCAGACCCATCAATTTCTTAGGAAGTGGCTAATTGAGCATCCAGAATTTCTCACAAATGAACTTTACGTTGGTGGTGATTCATACTCCGGAATTCCTATTCCTGTAATTACTCATGTAATTTCTCAAGCAAATGAAGACGGAATACAACCATGGATTAATCTTCAGGGATACCTGCTGGGGAATCCTGCAACAACCCGAACTGAAAAAAACTATAGAATCCCATTTGCTCATGGAATGGCACTTATTTCTGATGAACTATACCAGTCATTGCAAAAAAATTGCAGAGGAGAATTTACAAATGTAGACATTGCAAACGTGTTATGTACCAAAGATCTAGAGTCCTATGATGATAACGTATCAGGACTTTCTGAAAGCCATATTTTGGAACCAAAATGTGAGTTTGGTTCAGCAAAGCCCTTGGATGTTCCTTGGAAGAGATCTCTGATTGTTTACTATTCTTCAGAGTCTAACAATAATCAACTCGGATTGCCAGCTATAACTTGTCGGACTTATCCATACTTCCTCAGTAGTTATTGGGCTAATGATGGCGAGGTTCGCAATGCCCTTGGCATACGTAAGGGAACGAAATTAACATGGCAACGCTGTACCTTCGATATGCCTCAGGAGGAGGATATCCCTAGCAGCTTTCCATATCATGTAAGGCTCAGTAAAAAAGGGTACCGTTCACTGATATACAGCGGCGATCATGACATCCTTGTTCCTTACTTGGCAACTGAAGCATGGATAAAATCTTTAAACTACTCCATCGTGGATGATTGGAGACCGTGGCTCACAAATGGCCAAGTTTCAGGATACACAAGGACTTACTCCAATGCAATGACATTTGCAACTGTCAAGGGTGGTGGCCACACAGCTCCAGAGTATAAGCCTGAAGAATGCTTGGACATGTTTAGTAGATGGCTGTCTAGGAGGCCTTTGTAG 1311 0.4195 MHSIKLGVSACMIVIRYIGVGENEDVQAFYYFIESENNPKVDPLMLWLTGGPGCSAFSGLVFEIGPITFKIEEYNGSLPNLVLRPHSWTKVSSIIFVDLPVNTGFSYATTESASHRTDWSLVYQTHQFLRKWLIEHPEFLTNELYVGGDSYSGIPIPVITHVISQANEDGIQPWINLQGYLLGNPATTRTEKNYRIPFAHGMALISDELYQSLQKNCRGEFTNVDIANVLCTKDLESYDDNVSGLSESHILEPKCEFGSAKPLDVPWKRSLIVYYSSESNNNQLGLPAITCRTYPYFLSSYWANDGEVRNALGIRKGTKLTWQRCTFDMPQEEDIPSSFPYHVRLSKKGYRSLIYSGDHDILVPYLATEAWIKSLNYSIVDDWRPWLTNGQVSGYTRTYSNAMTFATVKGGGHTAPEYKPEECLDMFSRWLSRRPL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241856g00011 436 Pfam Serine carboxypeptidase 17 432 IPR001563 GO:0004185|GO:0006508
Stsc241856g00011 436 SUPERFAMILY alpha/beta-Hydrolases 17 435 IPR029058 -
Stsc241856g00011 436 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 16 420 IPR001563 GO:0004185|GO:0006508
Stsc241856g00011 436 PRINTS Carboxypeptidase C serine protease (S10) family signature 97 107 IPR001563 GO:0004185|GO:0006508
Stsc241856g00011 436 PRINTS Carboxypeptidase C serine protease (S10) family signature 403 416 IPR001563 GO:0004185|GO:0006508
Stsc241856g00011 436 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 157 IPR001563 GO:0004185|GO:0006508
Stsc241856g00011 436 PRINTS Carboxypeptidase C serine protease (S10) family signature 84 96 IPR001563 GO:0004185|GO:0006508
Stsc241856g00011 436 FunFam Serine carboxypeptidase-like 11 7 436 - -
Stsc241856g00011 436 Gene3D alpha/beta hydrolase 15 435 IPR029058 -
Stsc241856g00011 436 FunFam Carboxypeptidase 338 433 - -
Stsc241856g00011 436 FunFam Carboxypeptidase 290 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241856g00011 Stsc-Chr241856 35120 41179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241856g00011 298 436 Calmodulin-binding Proteins AT2G22960 62.590 1.78e-58 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241856g00011 K16296 - gmx:100792006 646.351