Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241856g00008 ATGGCAACTTGTCACATGTTCCATAGCTTCCTAATTCCCATTCTTGTATTATTAGTACATTTTTCAGCTCAACATGCTAACTGTGGCAACAGAGTGAAGTACCTTCCTGGGTTTGATGGACCCCTTCCTTTTGTGCTTGAAACTGGGTACATAGGAGTGGGGGAGAATGATGATGTACAAACTTTCTACTACTTCATTGAGTCAGAGAACAATCCAAGGGAGGATCCTCTCATGCTGTGGCTCACTGGTGGTCCTGGCTGCTCTGCTTTCTCTGGCCTTGTTTTTGAAATAGGACCACTTTCATTTCAATTTCATGATTATAATGGAGGACTCCCTACTTTGGTGTATAAACCATACTCCTGGACTAAGGCAAGTAGCATTGTGTTTGTAGATATGCCTGTTAATACTGGCTTTTCATATGCTACGACCGAATTTGCTTCTCGACGGAGCGATTGGTTGTCAGTCAATCAAACCTATCAATTTTTTAGGAAGTGGTTAACGGATCATCCAGCATTTCTCACAAACAAAGTTTACGTTGGTGGTGATTCATACTGTGGTCTTCTTATTCCAACAATTACTCACGAAATTTCAAAAGGAAATGAACATGGCCTCCAACCATGGATAAATCTCCAGGGATACCTGATGGGGAATCCTAAAGTTGATCAAAAAGAAGGAAACTATAAAATCCCATTTGCTCATGGGATGGGACTCATTTCTGATGAACTATACCAGTCACTGCAAGAACATTGTAAAGGAGAATATATAAATGTAGACAGCAGAAATGTTTTGTGTACAAGATATCTCGATTACTTTCGTGAGCTCATATCAGATCTTAGAGGTGCCAACATTTTGGAGCCACAATGTCTACCCGACTCACGGAAGCCATTGGAATCTTCTAGGAGGAGATCAGTAACAGAAAACTATCCTTGGAAGTTCAATGATACTAATCTCATATTACAATGTCGGGATGATATGTATCCCCTTAGTGAGTATTGGGCCAACAATGACACAGTCCGCGATGCGCTTAAAGTGAGGAAGGGAACTAAAGAGATATGGAAACGCTGCACCACAGATTTGCCTTACAAAAACGATATCCCTAGCAGCATTCCATATATCCTAAATCTCAGCAAGAAAGGCTATCGTTCACTGATCTACAGTGGAGATCATGACATGAATGTTACTTTCGTGGCAACTAAAGCGTGGATAAGATCGTTAAACTACTCCATTGTCGATGATTGGAGGCCATGGTATACTAACGGCCAAGTTGCAGGATACACAAGGACTTACTCCAATGCAATGACATTTGCAACTGTCAAGGGTGCAGGGCACACAGCACCAGAGTACAAGCCTCAGGAATGCTTACACATGTACACTAATTGGATCTCTAAGATGCCTTTTTAG 1401 0.4147 MATCHMFHSFLIPILVLLVHFSAQHANCGNRVKYLPGFDGPLPFVLETGYIGVGENDDVQTFYYFIESENNPREDPLMLWLTGGPGCSAFSGLVFEIGPLSFQFHDYNGGLPTLVYKPYSWTKASSIVFVDMPVNTGFSYATTEFASRRSDWLSVNQTYQFFRKWLTDHPAFLTNKVYVGGDSYCGLLIPTITHEISKGNEHGLQPWINLQGYLMGNPKVDQKEGNYKIPFAHGMGLISDELYQSLQEHCKGEYINVDSRNVLCTRYLDYFRELISDLRGANILEPQCLPDSRKPLESSRRRSVTENYPWKFNDTNLILQCRDDMYPLSEYWANNDTVRDALKVRKGTKEIWKRCTTDLPYKNDIPSSIPYILNLSKKGYRSLIYSGDHDMNVTFVATKAWIRSLNYSIVDDWRPWYTNGQVAGYTRTYSNAMTFATVKGAGHTAPEYKPQECLHMYTNWISKMPF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241856g00008 466 Pfam Serine carboxypeptidase 36 462 IPR001563 GO:0004185|GO:0006508
Stsc241856g00008 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 433 446 IPR001563 GO:0004185|GO:0006508
Stsc241856g00008 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Stsc241856g00008 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Stsc241856g00008 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 165 190 IPR001563 GO:0004185|GO:0006508
Stsc241856g00008 466 Gene3D alpha/beta hydrolase 26 297 IPR029058 -
Stsc241856g00008 466 Gene3D - 320 466 - -
Stsc241856g00008 466 SUPERFAMILY alpha/beta-Hydrolases 32 465 IPR029058 -
Stsc241856g00008 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 450 IPR001563 GO:0004185|GO:0006508
Stsc241856g00008 466 FunFam Carboxypeptidase 320 465 - -
Stsc241856g00008 466 FunFam Serine carboxypeptidase-like 11 26 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241856g00008 Stsc-Chr241856 27864 30590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241856g00008 24 55 Calmodulin-binding Proteins AT2G22960 65.625 4.00e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241856g00008 K16296 - gmx:100792006 637.106