Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241856g00004 ATGAACACTGAAGAAGCATCTTCTTCTTCTTCTTCTGCAACTCGAGACAATGACGATGGAGGAGGAAAACGGAAGAACAAAGCGAACCAGAAGGTTCCATTCTACAAGCTGTTCTCTTTCGCGGATCGCCTCGACGTTATCTTGATGATCGTTGGAACACTCGCTGCAATCGGAAATGGCTTGTCTCAGCCTCTAATGACTGTCATCTTCGGCAAGCTTATCAACACTTTTGGTTCCGGTGATCCTTCTCGCATCGTCAAGGAAGTTTCAAAGGTTGCATTGCTATTTGTTTACCTGGCTATTTGGTCTGGAATTACATCATTTCTGCGAGAAAGACAAGCAGCTAGGATCCGTGGTTTGTACTTGAAAACCATCTTGAAACAAGACATTACCTTCTTTGACACTGAAACAACAACCGGAGAGGTCATTGGTAGAATGTCTGGTGACACCATTCTCATTCAAGATGCCATGGGAGAGAAGGTTGGGAAGTTTATTCAGCTTGGTTCAACATTTGTTGGTGGCTTTGTGATTGCCTTCATAAAAGGATGGAAACTCTCTCTAGTTCTGCTTGCATGCATACCCTGTGTGGTGATTGCTGGTGGAATTATGTCCATAACGATGTCTAAAATGGCAAGCCGTGGACAGATTGCGTATGCAGAAGCAGGGAATGTTGTTGAACAAACAGTTGGAGCCATTAGAACTGTTGCATCTTTTACTGGGGAGAAGAAAGCAATAGAAAAGTACAATATCAAGTTAAAAGTTGCATATAATACAGTGGTTCAACAAGGAATGGCCTCAGGTATAGGACTTGGAGCACTTCTGTTCATCATCTTCAGCACCTATGGGCTTGCCATGTGGTATGGTTCCAGGCTCATCATTGAGAAAGGATACAATGGTGGAACAGTAATCAATGTAATCATTGCTCTTATGACCGGTGGAATGTAA 945 0.4307 MNTEEASSSSSSATRDNDDGGGKRKNKANQKVPFYKLFSFADRLDVILMIVGTLAAIGNGLSQPLMTVIFGKLINTFGSGDPSRIVKEVSKVALLFVYLAIWSGITSFLRERQAARIRGLYLKTILKQDITFFDTETTTGEVIGRMSGDTILIQDAMGEKVGKFIQLGSTFVGGFVIAFIKGWKLSLVLLACIPCVVIAGGIMSITMSKMASRGQIAYAEAGNVVEQTVGAIRTVASFTGEKKAIEKYNIKLKVAYNTVVQQGMASGIGLGALLFIIFSTYGLAMWYGSRLIIEKGYNGGTVINVIIALMTGGM 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241856g00004 314 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 314 - -
Stsc241856g00004 314 PANTHER ABC TRANSPORTER B FAMILY 12 314 IPR039421 -
Stsc241856g00004 314 Pfam ABC transporter transmembrane region 49 313 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc241856g00004 314 SUPERFAMILY ABC transporter transmembrane region 36 311 IPR036640 GO:0005524|GO:0016020
Stsc241856g00004 314 MobiDBLite consensus disorder prediction 1 27 - -
Stsc241856g00004 314 MobiDBLite consensus disorder prediction 1 16 - -
Stsc241856g00004 314 Gene3D ABC transporter type 1, transmembrane domain 3 314 IPR036640 GO:0005524|GO:0016020
Stsc241856g00004 314 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 314 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241856g00004 Stsc-Chr241856 14122 15742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241856g00004 16 314 Calmodulin-binding Proteins AT2G36910 39.308 3.68e-70 234