Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241856g00003 ATGAGGACAAACATCAAGAACAGCCATCAAAGGATGGAAAAGATACTGAATATCAAAGATCGTCAACTGGAGACTCTAGCTAGGAAATGTGCACGTTCAATCAAAGTTTCATCATCAACCCATGAGGAGATAAAGACTGGCAACTCATCCAGTCCAAAATGCAAGGATCGTCCTTCACATCAATCTAAATCATCTGTTCATGATGGCACTGATGATGGAATTAACAAGAAAGGATCTCCTAATAATAAGGAGTCTGAAGATTCACAACCAGGTCCAATCACTGACCGTGCTTCATTATGCAAGAAACTGAAATTTCTTAGCAAGGCTTGTGACAGCAACAAGAAGAAACCAATTGGTGCTTCTCTTGCATGTTTCGGTTACAATGCCACGATCATTGCATTTTGTAACTATGAAAAAAGTAAATTAGGAAATGCATTTGCAGCAGCATATAAGATGTTTGAGACAATAGAAAGGAAACCAAAAATTGATGCATATGACACAGATGGTGTTGTCTTGGAAGACATTAAGGGAGATATTGAACTCAAAGATGTTCACTTCAGATATCCCGCTAGGCCAGACGTGCAGATCTTTGCTGGATTCTCATTGCGTGTTCCAAATGCCACAACTACTGCTATGGTGATAAGCTTATGGGAAAGATTCTACGATCCTGATAGAGGAGAAGTACTCATAGATGGGGTCAACTTAAAGAATTTCTAA 717 0.3919 MRTNIKNSHQRMEKILNIKDRQLETLARKCARSIKVSSSTHEEIKTGNSSSPKCKDRPSHQSKSSVHDGTDDGINKKGSPNNKESEDSQPGPITDRASLCKKLKFLSKACDSNKKKPIGASLACFGYNATIIAFCNYEKSKLGNAFAAAYKMFETIERKPKIDAYDTDGVVLEDIKGDIELKDVHFRYPARPDVQIFAGFSLRVPNATTTAMVISLWERFYDPDRGEVLIDGVNLKNF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241856g00003 238 MobiDBLite consensus disorder prediction 56 83 - -
Stsc241856g00003 238 Gene3D ABC transporter type 1, transmembrane domain 141 168 IPR036640 GO:0005524|GO:0016020
Stsc241856g00003 238 MobiDBLite consensus disorder prediction 40 55 - -
Stsc241856g00003 238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 237 IPR027417 -
Stsc241856g00003 238 MobiDBLite consensus disorder prediction 32 94 - -
Stsc241856g00003 238 Gene3D - 169 238 IPR027417 -
Stsc241856g00003 238 PANTHER ABC TRANSPORTER B FAMILY 140 237 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241856g00003 Stsc-Chr241856 6680 8100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241856g00003 152 238 Calmodulin-binding Proteins AT2G36910 44.330 8.22e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241856g00003 K05658 - gmx:100801771 157.918