Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241854g00006 ATGGTGAGAGCTCCTTGCTGTGAAAAGATGGGATTGAAGAAGGGTCCATGGACCCCAGAAGAAGATCAAATCCTCACCTCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTCCCTAAGCAAGCAGGGCTGTCAAGGTGTGGAAAGAGCTGCAGATTAAGGTGGATAAACTATCTGAGGCCTGATATCAAGAGAGGCAATTTCACCATTGAAGAAGAAGAAACCATCATCAAGCTCCATGAAATGCTTGGAAACAGGTGGTCAGCGATCGCAGCAAAATTACCCGGAAGAACGGACAATGAGATCAAGAATGTGTGGCACACCCATTTGAAGAAGAGGCTCAACAAACCAAACCAAATGAATTCTTCATCATCATCAGATAATACCAAAAGGGTATCTAATAAGAAGGCAAAGATCAAACGTTCTGATTCAAATTCAAGCACCATAACTACTCTTCAATCATCAGAACAAACAAGTCTTAATAATGGTAACAATAATCTCGCTGAAATGGACACAACTTCAACCTCTAGTGAATTCTCATCAGCCACAACAAATAATAATGGTGAAAGCAAGAACATGGACATGAACATCAAGAGTGAGGAATTAGAAGATTCTTCATTGGAGACAATAATTGATGAAAGCTTTTGGTTAGAGGCTGCAATGGATGATGAAACCACCAACAACAACAACAACATGACAATCTCAAATAATAGTAACGAGTTATTACCATCACTTCAATATTATGATGACCCATTATTATTTAATTCCGAGGAGAATTTAAGCTTCCAAGAACCAAGTACAAACTTTGATGATGGCATGGATTTTTGGTATGATATATTCCTTAGAACTGGCGAATCAATAGAATTGCCAGATTTCTGA 885 0.3921 MVRAPCCEKMGLKKGPWTPEEDQILTSYIQKHGHGNWRALPKQAGLSRCGKSCRLRWINYLRPDIKRGNFTIEEEETIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLNKPNQMNSSSSSDNTKRVSNKKAKIKRSDSNSSTITTLQSSEQTSLNNGNNNLAEMDTTSTSSEFSSATTNNNGESKNMDMNIKSEELEDSSLETIIDESFWLEAAMDDETTNNNNNMTISNNSNELLPSLQYYDDPLLFNSEENLSFQEPSTNFDDGMDFWYDIFLRTGESIELPDF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241854g00006 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 232 - -
Stsc241854g00006 294 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc241854g00006 294 CDD SANT 69 112 IPR001005 -
Stsc241854g00006 294 MobiDBLite consensus disorder prediction 145 195 - -
Stsc241854g00006 294 MobiDBLite consensus disorder prediction 113 195 - -
Stsc241854g00006 294 FunFam MYB-related transcription factor 13 66 - -
Stsc241854g00006 294 CDD SANT 16 61 IPR001005 -
Stsc241854g00006 294 SMART sant 66 114 IPR001005 -
Stsc241854g00006 294 SMART sant 13 63 IPR001005 -
Stsc241854g00006 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc241854g00006 294 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc241854g00006 294 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc241854g00006 294 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc241854g00006 294 Gene3D - 13 66 - -
Stsc241854g00006 294 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Stsc241854g00006 294 Gene3D - 69 145 - -
Stsc241854g00006 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc241854g00006 294 MobiDBLite consensus disorder prediction 117 132 - -
Stsc241854g00006 294 FunFam Transcription factor MYB15 68 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241854g00006 Stsc-Chr241854 33649 36335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241854g00006 1 294 MYB Transcription Factor Family AT2G31180 46.128 3.52e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc241854g00006 Myb_DNA-binding 4.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241854g00006 K09422 - gmx:100807569 338.961