Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241850g00007 ATGGCGGAGGCGGCGAAGAAAGTGGTGGCGGAGGCGGAGGAGCTTCCCAGAACTATCGTGCGCCGTGTCGTGAAGGATAAGCTGTCCCGATGCTCCGAAGACGGAGACATATCCGTGAACAAAGACGCACTTGTGGCATTCTCTGAAAGCGCTAGGATCTTTATCCACTACATTTCCGCAACAGCTAATGACATTTGTAAGGAGTCAAAGAGGCAGATTATCAGTGCTGAGGATATTTTCAAGGCTCTTGAAGAAACAGAATTCTCCGAGTTTATCCGCCCTCTTAAAGCTTCTCTTGAAGACTTCAGGAAGAAAAATGCTGGGAAGAGAGCAGTAGTGTCAAAAGAAAAGGAAATTGAGAAAAACAAGAAAAGGAAGGTGGAAAGTGAGCAATCTGATAAAGTGGAGTCATCTGATAAGGGGGAGTCACAGTCACCTGAGAAAGGGGAAAGTGCCAAGTCTCAATTGTCTGTAGAATGCTTTCACCTCGTCCCTGTTTACTTGGTGAAAGAGAAGGTATTGCTCAAGTTATTTCTTGTTGAACTGGCATACTATTAG 558 0.4534 MAEAAKKVVAEAEELPRTIVRRVVKDKLSRCSEDGDISVNKDALVAFSESARIFIHYISATANDICKESKRQIISAEDIFKALEETEFSEFIRPLKASLEDFRKKNAGKRAVVSKEKEIEKNKKRKVESEQSDKVESSDKGESQSPEKGESAKSQLSVECFHLVPVYLVKEKVLLKLFLVELAYY 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241850g00007 185 FunFam DNA polymerase epsilon subunit 3 7 148 - -
Stsc241850g00007 185 SUPERFAMILY Histone-fold 15 137 IPR009072 GO:0046982
Stsc241850g00007 185 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 9 150 - -
Stsc241850g00007 185 Coils Coil 66 86 - -
Stsc241850g00007 185 MobiDBLite consensus disorder prediction 120 147 - -
Stsc241850g00007 185 Gene3D Histone, subunit A 6 155 IPR009072 GO:0046982
Stsc241850g00007 185 MobiDBLite consensus disorder prediction 120 154 - -
Stsc241850g00007 185 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 83 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241850g00007 Stsc-Chr241850 30275 31568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241850g00007 15 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 27.358 4.28e-09 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc241850g00007 CBFD_NFYB_HMF 2.1e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241850g00007 K02326 - gmx:100306382 213.772